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Prediction of Postoperative Lung Function in Lung Cancer Patients Using Machine Learning Models
BACKGROUND: Surgical resection is the standard treatment for early-stage lung cancer. Since postoperative lung function is related to mortality, predicted postoperative lung function is used to determine the treatment modality. The aim of this study was to evaluate the predictive performance of line...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Korean Academy of Tuberculosis and Respiratory Diseases
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10323210/ https://www.ncbi.nlm.nih.gov/pubmed/37038881 http://dx.doi.org/10.4046/trd.2022.0048 |
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author | Kwon, Oh Beom Han, Solji Lee, Hwa Young Kang, Hye Seon Kim, Sung Kyoung Kim, Ju Sang Park, Chan Kwon Lee, Sang Haak Kim, Seung Joon Kim, Jin Woo Yeo, Chang Dong |
author_facet | Kwon, Oh Beom Han, Solji Lee, Hwa Young Kang, Hye Seon Kim, Sung Kyoung Kim, Ju Sang Park, Chan Kwon Lee, Sang Haak Kim, Seung Joon Kim, Jin Woo Yeo, Chang Dong |
author_sort | Kwon, Oh Beom |
collection | PubMed |
description | BACKGROUND: Surgical resection is the standard treatment for early-stage lung cancer. Since postoperative lung function is related to mortality, predicted postoperative lung function is used to determine the treatment modality. The aim of this study was to evaluate the predictive performance of linear regression and machine learning models. METHODS: We extracted data from the Clinical Data Warehouse and developed three sets: set I, the linear regression model; set II, machine learning models omitting the missing data: and set III, machine learning models imputing the missing data. Six machine learning models, the least absolute shrinkage and selection operator (LASSO), Ridge regression, ElasticNet, Random Forest, eXtreme gradient boosting (XGBoost), and the light gradient boosting machine (LightGBM) were implemented. The forced expiratory volume in 1 second measured 6 months after surgery was defined as the outcome. Five-fold cross-validation was performed for hyperparameter tuning of the machine learning models. The dataset was split into training and test datasets at a 70:30 ratio. Implementation was done after dataset splitting in set III. Predictive performance was evaluated by R(2) and mean squared error (MSE) in the three sets. RESULTS: A total of 1,487 patients were included in sets I and III and 896 patients were included in set II. In set I, the R(2) value was 0.27 and in set II, LightGBM was the best model with the highest R(2) value of 0.5 and the lowest MSE of 154.95. In set III, LightGBM was the best model with the highest R(2) value of 0.56 and the lowest MSE of 174.07. CONCLUSION: The LightGBM model showed the best performance in predicting postoperative lung function. |
format | Online Article Text |
id | pubmed-10323210 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | The Korean Academy of Tuberculosis and Respiratory Diseases |
record_format | MEDLINE/PubMed |
spelling | pubmed-103232102023-07-07 Prediction of Postoperative Lung Function in Lung Cancer Patients Using Machine Learning Models Kwon, Oh Beom Han, Solji Lee, Hwa Young Kang, Hye Seon Kim, Sung Kyoung Kim, Ju Sang Park, Chan Kwon Lee, Sang Haak Kim, Seung Joon Kim, Jin Woo Yeo, Chang Dong Tuberc Respir Dis (Seoul) Original Article BACKGROUND: Surgical resection is the standard treatment for early-stage lung cancer. Since postoperative lung function is related to mortality, predicted postoperative lung function is used to determine the treatment modality. The aim of this study was to evaluate the predictive performance of linear regression and machine learning models. METHODS: We extracted data from the Clinical Data Warehouse and developed three sets: set I, the linear regression model; set II, machine learning models omitting the missing data: and set III, machine learning models imputing the missing data. Six machine learning models, the least absolute shrinkage and selection operator (LASSO), Ridge regression, ElasticNet, Random Forest, eXtreme gradient boosting (XGBoost), and the light gradient boosting machine (LightGBM) were implemented. The forced expiratory volume in 1 second measured 6 months after surgery was defined as the outcome. Five-fold cross-validation was performed for hyperparameter tuning of the machine learning models. The dataset was split into training and test datasets at a 70:30 ratio. Implementation was done after dataset splitting in set III. Predictive performance was evaluated by R(2) and mean squared error (MSE) in the three sets. RESULTS: A total of 1,487 patients were included in sets I and III and 896 patients were included in set II. In set I, the R(2) value was 0.27 and in set II, LightGBM was the best model with the highest R(2) value of 0.5 and the lowest MSE of 154.95. In set III, LightGBM was the best model with the highest R(2) value of 0.56 and the lowest MSE of 174.07. CONCLUSION: The LightGBM model showed the best performance in predicting postoperative lung function. The Korean Academy of Tuberculosis and Respiratory Diseases 2023-07 2023-04-11 /pmc/articles/PMC10323210/ /pubmed/37038881 http://dx.doi.org/10.4046/trd.2022.0048 Text en Copyright © 2023 The Korean Academy of Tuberculosis and Respiratory Diseases https://creativecommons.org/licenses/by-nc/4.0/It is identical to the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ). |
spellingShingle | Original Article Kwon, Oh Beom Han, Solji Lee, Hwa Young Kang, Hye Seon Kim, Sung Kyoung Kim, Ju Sang Park, Chan Kwon Lee, Sang Haak Kim, Seung Joon Kim, Jin Woo Yeo, Chang Dong Prediction of Postoperative Lung Function in Lung Cancer Patients Using Machine Learning Models |
title | Prediction of Postoperative Lung Function in Lung Cancer Patients Using Machine Learning Models |
title_full | Prediction of Postoperative Lung Function in Lung Cancer Patients Using Machine Learning Models |
title_fullStr | Prediction of Postoperative Lung Function in Lung Cancer Patients Using Machine Learning Models |
title_full_unstemmed | Prediction of Postoperative Lung Function in Lung Cancer Patients Using Machine Learning Models |
title_short | Prediction of Postoperative Lung Function in Lung Cancer Patients Using Machine Learning Models |
title_sort | prediction of postoperative lung function in lung cancer patients using machine learning models |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10323210/ https://www.ncbi.nlm.nih.gov/pubmed/37038881 http://dx.doi.org/10.4046/trd.2022.0048 |
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