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De novo genome assembly of Akanthomyces muscarius, a biocontrol agent of insect agricultural pests
The entomopathogenic fungus Akanthomyces muscarius is commonly used in agriculture to manage insect pests. Besides its use as a commercially important biological control agent, it also presents a potential model for studying host–pathogen interactions and the evolution of virulence in a laboratory s...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Microbiology Society
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10323777/ https://www.ncbi.nlm.nih.gov/pubmed/37424543 http://dx.doi.org/10.1099/acmi.0.000568.v3 |
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author | Erdos, Zoltan Studholme, David John Raymond, Ben Sharma, Manmohan D. |
author_facet | Erdos, Zoltan Studholme, David John Raymond, Ben Sharma, Manmohan D. |
author_sort | Erdos, Zoltan |
collection | PubMed |
description | The entomopathogenic fungus Akanthomyces muscarius is commonly used in agriculture to manage insect pests. Besides its use as a commercially important biological control agent, it also presents a potential model for studying host–pathogen interactions and the evolution of virulence in a laboratory setting. Here, we describe the first high-quality genome sequence for A. muscarius. We used long- and short-read sequencing to assemble a sequence of 36.1 Mb with an N(50) of 4.9 Mb. Genome annotation predicted 12347 genes, with 96.6 % completeness based on the core Hypocrealen gene set. The high-quality assembly and annotation of A. muscarius presented in this study provides an essential tool for future research on this commercially important species. |
format | Online Article Text |
id | pubmed-10323777 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Microbiology Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-103237772023-07-07 De novo genome assembly of Akanthomyces muscarius, a biocontrol agent of insect agricultural pests Erdos, Zoltan Studholme, David John Raymond, Ben Sharma, Manmohan D. Access Microbiol Short Communications The entomopathogenic fungus Akanthomyces muscarius is commonly used in agriculture to manage insect pests. Besides its use as a commercially important biological control agent, it also presents a potential model for studying host–pathogen interactions and the evolution of virulence in a laboratory setting. Here, we describe the first high-quality genome sequence for A. muscarius. We used long- and short-read sequencing to assemble a sequence of 36.1 Mb with an N(50) of 4.9 Mb. Genome annotation predicted 12347 genes, with 96.6 % completeness based on the core Hypocrealen gene set. The high-quality assembly and annotation of A. muscarius presented in this study provides an essential tool for future research on this commercially important species. Microbiology Society 2023-06-12 /pmc/articles/PMC10323777/ /pubmed/37424543 http://dx.doi.org/10.1099/acmi.0.000568.v3 Text en © 2023 The Authors https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License. |
spellingShingle | Short Communications Erdos, Zoltan Studholme, David John Raymond, Ben Sharma, Manmohan D. De novo genome assembly of Akanthomyces muscarius, a biocontrol agent of insect agricultural pests |
title |
De novo genome assembly of Akanthomyces muscarius, a biocontrol agent of insect agricultural pests |
title_full |
De novo genome assembly of Akanthomyces muscarius, a biocontrol agent of insect agricultural pests |
title_fullStr |
De novo genome assembly of Akanthomyces muscarius, a biocontrol agent of insect agricultural pests |
title_full_unstemmed |
De novo genome assembly of Akanthomyces muscarius, a biocontrol agent of insect agricultural pests |
title_short |
De novo genome assembly of Akanthomyces muscarius, a biocontrol agent of insect agricultural pests |
title_sort | de novo genome assembly of akanthomyces muscarius, a biocontrol agent of insect agricultural pests |
topic | Short Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10323777/ https://www.ncbi.nlm.nih.gov/pubmed/37424543 http://dx.doi.org/10.1099/acmi.0.000568.v3 |
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