Characterization of the complete mitochondrial genome of the critically endangered Southern River Terrapin, Batagur affinis affinis (Reptilia: Geoemydidae)

In this study, we report the nearly complete mitochondrial sequence of Batagur affinis affinis. The assembled mitogenome consists of 13 PCGs, 22 tRNA genes, two rRNAs and one near-complete D-loop region. Of the annotated genes, the ND6 subunit gene and eight tRNA genes were encoded on the L-strand,...

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Autores principales: Mohd Salleh, Mohd Hairul, Esa, Yuzine, Gan, Han Ming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Plastome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10324429/
https://www.ncbi.nlm.nih.gov/pubmed/37426572
http://dx.doi.org/10.1080/23802359.2023.2222851
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author Mohd Salleh, Mohd Hairul
Esa, Yuzine
Gan, Han Ming
author_facet Mohd Salleh, Mohd Hairul
Esa, Yuzine
Gan, Han Ming
author_sort Mohd Salleh, Mohd Hairul
collection PubMed
description In this study, we report the nearly complete mitochondrial sequence of Batagur affinis affinis. The assembled mitogenome consists of 13 PCGs, 22 tRNA genes, two rRNAs and one near-complete D-loop region. Of the annotated genes, the ND6 subunit gene and eight tRNA genes were encoded on the L-strand, while the remaining genes were dispersed on the H-strand. Except for CO1, which has a GTG start codon, all protein-coding genes begin with ATG. The mitogenome has been deposited in NCBI GenBank under the accession number OQ409915. Phylogenetic tree analysis based on publicly available mitogenomes indicate the sister grouping of B. affinis affinis with B. kachuga.
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spelling pubmed-103244292023-07-07 Characterization of the complete mitochondrial genome of the critically endangered Southern River Terrapin, Batagur affinis affinis (Reptilia: Geoemydidae) Mohd Salleh, Mohd Hairul Esa, Yuzine Gan, Han Ming Mitochondrial DNA B Resour Plastome Report In this study, we report the nearly complete mitochondrial sequence of Batagur affinis affinis. The assembled mitogenome consists of 13 PCGs, 22 tRNA genes, two rRNAs and one near-complete D-loop region. Of the annotated genes, the ND6 subunit gene and eight tRNA genes were encoded on the L-strand, while the remaining genes were dispersed on the H-strand. Except for CO1, which has a GTG start codon, all protein-coding genes begin with ATG. The mitogenome has been deposited in NCBI GenBank under the accession number OQ409915. Phylogenetic tree analysis based on publicly available mitogenomes indicate the sister grouping of B. affinis affinis with B. kachuga. Taylor & Francis 2023-07-04 /pmc/articles/PMC10324429/ /pubmed/37426572 http://dx.doi.org/10.1080/23802359.2023.2222851 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.
spellingShingle Plastome Report
Mohd Salleh, Mohd Hairul
Esa, Yuzine
Gan, Han Ming
Characterization of the complete mitochondrial genome of the critically endangered Southern River Terrapin, Batagur affinis affinis (Reptilia: Geoemydidae)
title Characterization of the complete mitochondrial genome of the critically endangered Southern River Terrapin, Batagur affinis affinis (Reptilia: Geoemydidae)
title_full Characterization of the complete mitochondrial genome of the critically endangered Southern River Terrapin, Batagur affinis affinis (Reptilia: Geoemydidae)
title_fullStr Characterization of the complete mitochondrial genome of the critically endangered Southern River Terrapin, Batagur affinis affinis (Reptilia: Geoemydidae)
title_full_unstemmed Characterization of the complete mitochondrial genome of the critically endangered Southern River Terrapin, Batagur affinis affinis (Reptilia: Geoemydidae)
title_short Characterization of the complete mitochondrial genome of the critically endangered Southern River Terrapin, Batagur affinis affinis (Reptilia: Geoemydidae)
title_sort characterization of the complete mitochondrial genome of the critically endangered southern river terrapin, batagur affinis affinis (reptilia: geoemydidae)
topic Plastome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10324429/
https://www.ncbi.nlm.nih.gov/pubmed/37426572
http://dx.doi.org/10.1080/23802359.2023.2222851
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AT esayuzine characterizationofthecompletemitochondrialgenomeofthecriticallyendangeredsouthernriverterrapinbataguraffinisaffinisreptiliageoemydidae
AT ganhanming characterizationofthecompletemitochondrialgenomeofthecriticallyendangeredsouthernriverterrapinbataguraffinisaffinisreptiliageoemydidae

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