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Status of genome function annotation in model organisms and crops

Since the entry into genome‐enabled biology several decades ago, much progress has been made in determining, describing, and disseminating the functions of genes and their products. Yet, this information is still difficult to access for many scientists and for most genomes. To provide easy access an...

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Detalles Bibliográficos
Autores principales: Xue, Bo, Rhee, Seung Y.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10326244/
https://www.ncbi.nlm.nih.gov/pubmed/37426891
http://dx.doi.org/10.1002/pld3.499
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author Xue, Bo
Rhee, Seung Y.
author_facet Xue, Bo
Rhee, Seung Y.
author_sort Xue, Bo
collection PubMed
description Since the entry into genome‐enabled biology several decades ago, much progress has been made in determining, describing, and disseminating the functions of genes and their products. Yet, this information is still difficult to access for many scientists and for most genomes. To provide easy access and a graphical summary of the status of genome function annotation for model organisms and bioenergy and food crop species, we created a web application (https://genomeannotation.rheelab.org) to visualize, search, and download genome annotation data for 28 species. The summary graphics and data tables will be updated semi‐annually, and snapshots will be archived to provide a historical record of the progress of genome function annotation efforts. Clear and simple visualization of up‐to‐date genome function annotation status, including the extent of what is unknown, will help address the grand challenge of elucidating the functions of all genes in organisms.
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spelling pubmed-103262442023-07-08 Status of genome function annotation in model organisms and crops Xue, Bo Rhee, Seung Y. Plant Direct Original Research Since the entry into genome‐enabled biology several decades ago, much progress has been made in determining, describing, and disseminating the functions of genes and their products. Yet, this information is still difficult to access for many scientists and for most genomes. To provide easy access and a graphical summary of the status of genome function annotation for model organisms and bioenergy and food crop species, we created a web application (https://genomeannotation.rheelab.org) to visualize, search, and download genome annotation data for 28 species. The summary graphics and data tables will be updated semi‐annually, and snapshots will be archived to provide a historical record of the progress of genome function annotation efforts. Clear and simple visualization of up‐to‐date genome function annotation status, including the extent of what is unknown, will help address the grand challenge of elucidating the functions of all genes in organisms. John Wiley and Sons Inc. 2023-07-06 /pmc/articles/PMC10326244/ /pubmed/37426891 http://dx.doi.org/10.1002/pld3.499 Text en © 2023 The Authors. Plant Direct published by American Society of Plant Biologists and the Society for Experimental Biology and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Original Research
Xue, Bo
Rhee, Seung Y.
Status of genome function annotation in model organisms and crops
title Status of genome function annotation in model organisms and crops
title_full Status of genome function annotation in model organisms and crops
title_fullStr Status of genome function annotation in model organisms and crops
title_full_unstemmed Status of genome function annotation in model organisms and crops
title_short Status of genome function annotation in model organisms and crops
title_sort status of genome function annotation in model organisms and crops
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10326244/
https://www.ncbi.nlm.nih.gov/pubmed/37426891
http://dx.doi.org/10.1002/pld3.499
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