Cargando…

An information theoretic approach to detecting spatially varying genes

A key step in spatial transcriptomics is identifying genes with spatially varying expression patterns. We adopt an information theoretic perspective to this problem by equating the degree of spatial coherence with the Jensen-Shannon divergence between pairs of nearby cells and pairs of distant cells...

Descripción completa

Detalles Bibliográficos
Autores principales:	Jones, Daniel C., Danaher, Patrick, Kim, Youngmi, Beechem, Joseph M., Gottardo, Raphael, Newell, Evan W.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10326450/ https://www.ncbi.nlm.nih.gov/pubmed/37426750 http://dx.doi.org/10.1016/j.crmeth.2023.100507

Ejemplares similares

Advances in mixed cell deconvolution enable quantification of cell types in spatial transcriptomic data
por: Danaher, Patrick, et al.
Publicado: (2022)

Modeling Bi-modality Improves Characterization of Cell Cycle on Gene Expression in Single Cells
por: McDavid, Andrew, et al.
Publicado: (2014)

Spatial Organization of the Gene Regulatory Program: An Information Theoretical Approach to Breast Cancer Transcriptomics
por: de Anda-Jáuregui, Guillermo, et al.
Publicado: (2019)

Gene expression markers of Tumor Infiltrating Leukocytes
por: Danaher, Patrick, et al.
Publicado: (2017)

Locating Sensors for Detecting Source-to-Target Patterns of Special Nuclear Material Smuggling: A Spatial Information Theoretic Approach
por: Przybyla, Jay, et al.
Publicado: (2010)

Factors Influencing the Detection of Spatially-Varying Surface Gloss
por: Wendt, Gunnar, et al.
Publicado: (2019)

An Information-Theoretic Approach to Detect the Associations of GPS-Tracked Heifers in Pasture
por: Meckbach, Cornelia, et al.
Publicado: (2021)

SpatialCorr identifies gene sets with spatially varying correlation structure
por: Bernstein, Matthew N., et al.
Publicado: (2022)

Spatial Information-Theoretic Optimal LPI Radar Waveform Design
por: Chen, Jun, et al.
Publicado: (2022)

Detection of unrecognized spatial disorientation: A theoretical perspective
por: Hao, Chenru, et al.
Publicado: (2022)

A group theoretic approach to quantum information
por: Hayashi, Masahito
Publicado: (2017)

An Informational Theoretical Approach to the Entropy of Liquids and Solutions
por: Ben-Naim, Arieh
Publicado: (2018)

Time lagged information theoretic approaches to the reverse engineering of gene regulatory networks
por: Chaitankar, Vijender, et al.
Publicado: (2010)

Sequence-based information-theoretic features for gene essentiality prediction
por: Nigatu, Dawit, et al.
Publicado: (2017)

Information Theoretic Approaches to Deciphering the Neural Code with Functional Fluorescence Imaging
por: Climer, Jason R., et al.
Publicado: (2021)

A new theoretical perspective on concealed information detection
por: klein Selle, Nathalie, et al.
Publicado: (2022)

Distinguishing prognostic and predictive biomarkers: an information theoretic approach
por: Sechidis, Konstantinos, et al.
Publicado: (2018)

Distinguishing prognostic and predictive biomarkers: an information theoretic approach
por: Sechidis, Konstantinos, et al.
Publicado: (2018)

An Information Theoretic Approach to Reveal the Formation of Shared Representations
por: Eguchi, Akihiro, et al.
Publicado: (2020)

An Information Theoretic Approach to Symbolic Learning in Synthetic Languages
por: Back, Andrew D., et al.
Publicado: (2022)

An information theoretic approach to link prediction in multiplex networks
por: Jafari, Seyed Hossein, et al.
Publicado: (2021)

An information-theoretic approach to single cell sequencing analysis
por: Casey, Michael J., et al.
Publicado: (2023)

Observing Rivers With Varying Spatial Scales
por: Rodríguez, Ernesto, et al.
Publicado: (2020)

Study of Meta-analysis strategies for network inference using information-theoretic approaches
por: Pham, Ngoc C., et al.
Publicado: (2017)

Detecting multiple spatial disease clusters: information criterion and scan statistic approach
por: Takahashi, Kunihiko, et al.
Publicado: (2020)

Preliminary validation of nCounter PanCancer immune profiling of FFPE slides and pbmc in CITN-05, a CITN study of the immunological effects of an IDO1 inhibitor in patients with ovarian carcinoma
por: Dennis, Lucas, et al.
Publicado: (2015)

A graph-theoretic approach for inparalog detection
por: Tremblay-Savard, Olivier, et al.
Publicado: (2012)

Asymptotic Information-Theoretic Detection of Dynamical Organization in Complex Systems
por: D’Addese, Gianluca, et al.
Publicado: (2021)

Information Theoretic Causality Detection between Financial and Sentiment Data
por: Scaramozzino, Roberta, et al.
Publicado: (2021)

Model selection and inference: a practical information-theoretic approach
por: Burnham, Kenneth P, et al.
Publicado: (1998)

Information Ergonomics: A theoretical approach and practical experience in transportation
por: Stein, Michael, et al.
Publicado: (2012)

An Information-Theoretic Machine Learning Approach to Expression QTL Analysis
por: Huang, Tao, et al.
Publicado: (2013)

Understanding Confounding Effects in Linguistic Coordination: An Information-Theoretic Approach
por: Gao, Shuyang, et al.
Publicado: (2015)

Using information‐theoretic approaches for model selection in meta‐analysis
por: Cinar, Ozan, et al.
Publicado: (2021)

Population Risk Improvement with Model Compression: An Information-Theoretic Approach †
por: Bu, Yuheng, et al.
Publicado: (2021)

Efficient Markets and Contingent Claims Valuation: An Information Theoretic Approach
por: Lindgren, Jussi
Publicado: (2020)

A sampling-based approach for information-theoretic inspection management
por: Bull, Lawrence A., et al.
Publicado: (2022)

Flickering Emergences: The Question of Locality in Information-Theoretic Approaches to Emergence
por: Varley, Thomas F.
Publicado: (2022)

A Targeted Multi-omic Analysis Approach Measures Protein Expression and Low-Abundance Transcripts on the Single-Cell Level
por: Mair, Florian, et al.
Publicado: (2020)

Information-Theoretic Approaches in EEG Correlates of Auditory Perceptual Awareness under Informational Masking
por: Veyrié, Alexandre, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_b01np5m8tosmmefpdt7api110b