Cargando…

Plastome phylogenomics reveals an early Pliocene North- and Central America colonization by long-distance dispersal from South America of a highly diverse bromeliad lineage

Understanding the spatial and temporal frameworks of species diversification is fundamental in evolutionary biology. Assessing the geographic origin and dispersal history of highly diverse lineages of rapid diversification can be hindered by the lack of appropriately sampled, resolved, and strongly...

Descripción completa

Detalles Bibliográficos
Autores principales: Vera-Paz, Sandra I., Granados Mendoza, Carolina, Díaz Contreras Díaz, Daniel D., Jost, Matthias, Salazar, Gerardo A., Rossado, Andrés J., Montes-Azcué, Claudia A., Hernández-Gutiérrez, Rebeca, Magallón, Susana, Sánchez-González, Luis A., Gouda, Eric J., Cabrera, Lidia I., Ramírez-Morillo, Ivón M., Flores-Cruz, María, Granados-Aguilar, Xochitl, Martínez-García, Ana L., Hornung-Leoni, Claudia T., Barfuss, Michael H.J., Wanke, Stefan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10326849/
https://www.ncbi.nlm.nih.gov/pubmed/37426962
http://dx.doi.org/10.3389/fpls.2023.1205511
_version_ 1785069508815224832
author Vera-Paz, Sandra I.
Granados Mendoza, Carolina
Díaz Contreras Díaz, Daniel D.
Jost, Matthias
Salazar, Gerardo A.
Rossado, Andrés J.
Montes-Azcué, Claudia A.
Hernández-Gutiérrez, Rebeca
Magallón, Susana
Sánchez-González, Luis A.
Gouda, Eric J.
Cabrera, Lidia I.
Ramírez-Morillo, Ivón M.
Flores-Cruz, María
Granados-Aguilar, Xochitl
Martínez-García, Ana L.
Hornung-Leoni, Claudia T.
Barfuss, Michael H.J.
Wanke, Stefan
author_facet Vera-Paz, Sandra I.
Granados Mendoza, Carolina
Díaz Contreras Díaz, Daniel D.
Jost, Matthias
Salazar, Gerardo A.
Rossado, Andrés J.
Montes-Azcué, Claudia A.
Hernández-Gutiérrez, Rebeca
Magallón, Susana
Sánchez-González, Luis A.
Gouda, Eric J.
Cabrera, Lidia I.
Ramírez-Morillo, Ivón M.
Flores-Cruz, María
Granados-Aguilar, Xochitl
Martínez-García, Ana L.
Hornung-Leoni, Claudia T.
Barfuss, Michael H.J.
Wanke, Stefan
author_sort Vera-Paz, Sandra I.
collection PubMed
description Understanding the spatial and temporal frameworks of species diversification is fundamental in evolutionary biology. Assessing the geographic origin and dispersal history of highly diverse lineages of rapid diversification can be hindered by the lack of appropriately sampled, resolved, and strongly supported phylogenetic contexts. The use of currently available cost-efficient sequencing strategies allows for the generation of a substantial amount of sequence data for dense taxonomic samplings, which together with well-curated geographic information and biogeographic models allow us to formally test the mode and tempo of dispersal events occurring in quick succession. Here, we assess the spatial and temporal frameworks for the origin and dispersal history of the expanded clade K, a highly diverse Tillandsia subgenus Tillandsia (Bromeliaceae, Poales) lineage hypothesized to have undergone a rapid radiation across the Neotropics. We assembled full plastomes from Hyb-Seq data for a dense taxon sampling of the expanded clade K plus a careful selection of outgroup species and used them to estimate a time- calibrated phylogenetic framework. This dated phylogenetic hypothesis was then used to perform biogeographic model tests and ancestral area reconstructions based on a comprehensive compilation of geographic information. The expanded clade K colonized North and Central America, specifically the Mexican transition zone and the Mesoamerican dominion, by long-distance dispersal from South America at least 4.86 Mya, when most of the Mexican highlands were already formed. Several dispersal events occurred subsequently northward to the southern Nearctic region, eastward to the Caribbean, and southward to the Pacific dominion during the last 2.8 Mya, a period characterized by pronounced climate fluctuations, derived from glacial–interglacial climate oscillations, and substantial volcanic activity, mainly in the Trans-Mexican Volcanic Belt. Our taxon sampling design allowed us to calibrate for the first time several nodes, not only within the expanded clade K focal group but also in other Tillandsioideae lineages. We expect that this dated phylogenetic framework will facilitate future macroevolutionary studies and provide reference age estimates to perform secondary calibrations for other Tillandsioideae lineages.
format Online
Article
Text
id pubmed-10326849
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-103268492023-07-08 Plastome phylogenomics reveals an early Pliocene North- and Central America colonization by long-distance dispersal from South America of a highly diverse bromeliad lineage Vera-Paz, Sandra I. Granados Mendoza, Carolina Díaz Contreras Díaz, Daniel D. Jost, Matthias Salazar, Gerardo A. Rossado, Andrés J. Montes-Azcué, Claudia A. Hernández-Gutiérrez, Rebeca Magallón, Susana Sánchez-González, Luis A. Gouda, Eric J. Cabrera, Lidia I. Ramírez-Morillo, Ivón M. Flores-Cruz, María Granados-Aguilar, Xochitl Martínez-García, Ana L. Hornung-Leoni, Claudia T. Barfuss, Michael H.J. Wanke, Stefan Front Plant Sci Plant Science Understanding the spatial and temporal frameworks of species diversification is fundamental in evolutionary biology. Assessing the geographic origin and dispersal history of highly diverse lineages of rapid diversification can be hindered by the lack of appropriately sampled, resolved, and strongly supported phylogenetic contexts. The use of currently available cost-efficient sequencing strategies allows for the generation of a substantial amount of sequence data for dense taxonomic samplings, which together with well-curated geographic information and biogeographic models allow us to formally test the mode and tempo of dispersal events occurring in quick succession. Here, we assess the spatial and temporal frameworks for the origin and dispersal history of the expanded clade K, a highly diverse Tillandsia subgenus Tillandsia (Bromeliaceae, Poales) lineage hypothesized to have undergone a rapid radiation across the Neotropics. We assembled full plastomes from Hyb-Seq data for a dense taxon sampling of the expanded clade K plus a careful selection of outgroup species and used them to estimate a time- calibrated phylogenetic framework. This dated phylogenetic hypothesis was then used to perform biogeographic model tests and ancestral area reconstructions based on a comprehensive compilation of geographic information. The expanded clade K colonized North and Central America, specifically the Mexican transition zone and the Mesoamerican dominion, by long-distance dispersal from South America at least 4.86 Mya, when most of the Mexican highlands were already formed. Several dispersal events occurred subsequently northward to the southern Nearctic region, eastward to the Caribbean, and southward to the Pacific dominion during the last 2.8 Mya, a period characterized by pronounced climate fluctuations, derived from glacial–interglacial climate oscillations, and substantial volcanic activity, mainly in the Trans-Mexican Volcanic Belt. Our taxon sampling design allowed us to calibrate for the first time several nodes, not only within the expanded clade K focal group but also in other Tillandsioideae lineages. We expect that this dated phylogenetic framework will facilitate future macroevolutionary studies and provide reference age estimates to perform secondary calibrations for other Tillandsioideae lineages. Frontiers Media S.A. 2023-06-23 /pmc/articles/PMC10326849/ /pubmed/37426962 http://dx.doi.org/10.3389/fpls.2023.1205511 Text en Copyright © 2023 Vera-Paz, Granados Mendoza, Díaz Contreras Díaz, Jost, Salazar, Rossado, Montes-Azcué, Hernández-Gutiérrez, Magallón, Sánchez-González, Gouda, Cabrera, Ramírez-Morillo, Flores-Cruz, Granados-Aguilar, Martínez-García, Hornung-Leoni, Barfuss and Wanke https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Vera-Paz, Sandra I.
Granados Mendoza, Carolina
Díaz Contreras Díaz, Daniel D.
Jost, Matthias
Salazar, Gerardo A.
Rossado, Andrés J.
Montes-Azcué, Claudia A.
Hernández-Gutiérrez, Rebeca
Magallón, Susana
Sánchez-González, Luis A.
Gouda, Eric J.
Cabrera, Lidia I.
Ramírez-Morillo, Ivón M.
Flores-Cruz, María
Granados-Aguilar, Xochitl
Martínez-García, Ana L.
Hornung-Leoni, Claudia T.
Barfuss, Michael H.J.
Wanke, Stefan
Plastome phylogenomics reveals an early Pliocene North- and Central America colonization by long-distance dispersal from South America of a highly diverse bromeliad lineage
title Plastome phylogenomics reveals an early Pliocene North- and Central America colonization by long-distance dispersal from South America of a highly diverse bromeliad lineage
title_full Plastome phylogenomics reveals an early Pliocene North- and Central America colonization by long-distance dispersal from South America of a highly diverse bromeliad lineage
title_fullStr Plastome phylogenomics reveals an early Pliocene North- and Central America colonization by long-distance dispersal from South America of a highly diverse bromeliad lineage
title_full_unstemmed Plastome phylogenomics reveals an early Pliocene North- and Central America colonization by long-distance dispersal from South America of a highly diverse bromeliad lineage
title_short Plastome phylogenomics reveals an early Pliocene North- and Central America colonization by long-distance dispersal from South America of a highly diverse bromeliad lineage
title_sort plastome phylogenomics reveals an early pliocene north- and central america colonization by long-distance dispersal from south america of a highly diverse bromeliad lineage
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10326849/
https://www.ncbi.nlm.nih.gov/pubmed/37426962
http://dx.doi.org/10.3389/fpls.2023.1205511
work_keys_str_mv AT verapazsandrai plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage
AT granadosmendozacarolina plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage
AT diazcontrerasdiazdanield plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage
AT jostmatthias plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage
AT salazargerardoa plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage
AT rossadoandresj plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage
AT montesazcueclaudiaa plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage
AT hernandezgutierrezrebeca plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage
AT magallonsusana plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage
AT sanchezgonzalezluisa plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage
AT goudaericj plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage
AT cabreralidiai plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage
AT ramirezmorilloivonm plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage
AT florescruzmaria plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage
AT granadosaguilarxochitl plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage
AT martinezgarciaanal plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage
AT hornungleoniclaudiat plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage
AT barfussmichaelhj plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage
AT wankestefan plastomephylogenomicsrevealsanearlypliocenenorthandcentralamericacolonizationbylongdistancedispersalfromsouthamericaofahighlydiversebromeliadlineage