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Minimum information and guidelines for reporting a Multiplexed Assay of Variant Effect
Multiplexed Assays of Variant Effect (MAVEs) have emerged as a powerful approach for interrogating thousands of genetic variants in a single experiment. The flexibility and widespread adoption of these techniques across diverse disciplines has led to a heterogeneous mix of data formats and descripti...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cornell University
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10327236/ https://www.ncbi.nlm.nih.gov/pubmed/37426450 |
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author | Claussnitzer, Melina Parikh, Victoria N. Wagner, Alex H. Arbesfeld, Jeremy A. Bult, Carol J. Firth, Helen V. Muffley, Lara A. Nguyen Ba, Alex N. Riehle, Kevin Roth, Frederick P. Tabet, Daniel Bolognesi, Benedetta Glazer, Andrew M. Rubin, Alan F. |
author_facet | Claussnitzer, Melina Parikh, Victoria N. Wagner, Alex H. Arbesfeld, Jeremy A. Bult, Carol J. Firth, Helen V. Muffley, Lara A. Nguyen Ba, Alex N. Riehle, Kevin Roth, Frederick P. Tabet, Daniel Bolognesi, Benedetta Glazer, Andrew M. Rubin, Alan F. |
author_sort | Claussnitzer, Melina |
collection | PubMed |
description | Multiplexed Assays of Variant Effect (MAVEs) have emerged as a powerful approach for interrogating thousands of genetic variants in a single experiment. The flexibility and widespread adoption of these techniques across diverse disciplines has led to a heterogeneous mix of data formats and descriptions, which complicates the downstream use of the resulting datasets. To address these issues and promote reproducibility and reuse of MAVE data, we define a set of minimum information standards for MAVE data and metadata and outline a controlled vocabulary aligned with established biomedical ontologies for describing these experimental designs. |
format | Online Article Text |
id | pubmed-10327236 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cornell University |
record_format | MEDLINE/PubMed |
spelling | pubmed-103272362023-07-08 Minimum information and guidelines for reporting a Multiplexed Assay of Variant Effect Claussnitzer, Melina Parikh, Victoria N. Wagner, Alex H. Arbesfeld, Jeremy A. Bult, Carol J. Firth, Helen V. Muffley, Lara A. Nguyen Ba, Alex N. Riehle, Kevin Roth, Frederick P. Tabet, Daniel Bolognesi, Benedetta Glazer, Andrew M. Rubin, Alan F. ArXiv Article Multiplexed Assays of Variant Effect (MAVEs) have emerged as a powerful approach for interrogating thousands of genetic variants in a single experiment. The flexibility and widespread adoption of these techniques across diverse disciplines has led to a heterogeneous mix of data formats and descriptions, which complicates the downstream use of the resulting datasets. To address these issues and promote reproducibility and reuse of MAVE data, we define a set of minimum information standards for MAVE data and metadata and outline a controlled vocabulary aligned with established biomedical ontologies for describing these experimental designs. Cornell University 2023-06-26 /pmc/articles/PMC10327236/ /pubmed/37426450 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use. |
spellingShingle | Article Claussnitzer, Melina Parikh, Victoria N. Wagner, Alex H. Arbesfeld, Jeremy A. Bult, Carol J. Firth, Helen V. Muffley, Lara A. Nguyen Ba, Alex N. Riehle, Kevin Roth, Frederick P. Tabet, Daniel Bolognesi, Benedetta Glazer, Andrew M. Rubin, Alan F. Minimum information and guidelines for reporting a Multiplexed Assay of Variant Effect |
title | Minimum information and guidelines for reporting a Multiplexed Assay of Variant Effect |
title_full | Minimum information and guidelines for reporting a Multiplexed Assay of Variant Effect |
title_fullStr | Minimum information and guidelines for reporting a Multiplexed Assay of Variant Effect |
title_full_unstemmed | Minimum information and guidelines for reporting a Multiplexed Assay of Variant Effect |
title_short | Minimum information and guidelines for reporting a Multiplexed Assay of Variant Effect |
title_sort | minimum information and guidelines for reporting a multiplexed assay of variant effect |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10327236/ https://www.ncbi.nlm.nih.gov/pubmed/37426450 |
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