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Stochastic Gradient Bayesian Optimal Experimental Designs for Simulation-based Inference
Simulation-based inference (SBI) methods tackle complex scientific models with challenging inverse problems. However, SBI models often face a significant hurdle due to their non-differentiable nature, which hampers the use of gradient-based optimization techniques. Bayesian Optimal Experimental Desi...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cornell University
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10327247/ https://www.ncbi.nlm.nih.gov/pubmed/37426454 |
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author | Zaballa, Vincent D. Hui, Elliot E. |
author_facet | Zaballa, Vincent D. Hui, Elliot E. |
author_sort | Zaballa, Vincent D. |
collection | PubMed |
description | Simulation-based inference (SBI) methods tackle complex scientific models with challenging inverse problems. However, SBI models often face a significant hurdle due to their non-differentiable nature, which hampers the use of gradient-based optimization techniques. Bayesian Optimal Experimental Design (BOED) is a powerful approach that aims to make the most efficient use of experimental resources for improved inferences. While stochastic gradient BOED methods have shown promising results in high-dimensional design problems, they have mostly neglected the integration of BOED with SBI due to the difficult non-differentiable property of many SBI simulators. In this work, we establish a crucial connection between ratio-based SBI inference algorithms and stochastic gradient-based variational inference by leveraging mutual information bounds. This connection allows us to extend BOED to SBI applications, enabling the simultaneous optimization of experimental designs and amortized inference functions. We demonstrate our approach on a simple linear model and offer implementation details for practitioners. |
format | Online Article Text |
id | pubmed-10327247 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cornell University |
record_format | MEDLINE/PubMed |
spelling | pubmed-103272472023-07-08 Stochastic Gradient Bayesian Optimal Experimental Designs for Simulation-based Inference Zaballa, Vincent D. Hui, Elliot E. ArXiv Article Simulation-based inference (SBI) methods tackle complex scientific models with challenging inverse problems. However, SBI models often face a significant hurdle due to their non-differentiable nature, which hampers the use of gradient-based optimization techniques. Bayesian Optimal Experimental Design (BOED) is a powerful approach that aims to make the most efficient use of experimental resources for improved inferences. While stochastic gradient BOED methods have shown promising results in high-dimensional design problems, they have mostly neglected the integration of BOED with SBI due to the difficult non-differentiable property of many SBI simulators. In this work, we establish a crucial connection between ratio-based SBI inference algorithms and stochastic gradient-based variational inference by leveraging mutual information bounds. This connection allows us to extend BOED to SBI applications, enabling the simultaneous optimization of experimental designs and amortized inference functions. We demonstrate our approach on a simple linear model and offer implementation details for practitioners. Cornell University 2023-06-27 /pmc/articles/PMC10327247/ /pubmed/37426454 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use. |
spellingShingle | Article Zaballa, Vincent D. Hui, Elliot E. Stochastic Gradient Bayesian Optimal Experimental Designs for Simulation-based Inference |
title | Stochastic Gradient Bayesian Optimal Experimental Designs for Simulation-based Inference |
title_full | Stochastic Gradient Bayesian Optimal Experimental Designs for Simulation-based Inference |
title_fullStr | Stochastic Gradient Bayesian Optimal Experimental Designs for Simulation-based Inference |
title_full_unstemmed | Stochastic Gradient Bayesian Optimal Experimental Designs for Simulation-based Inference |
title_short | Stochastic Gradient Bayesian Optimal Experimental Designs for Simulation-based Inference |
title_sort | stochastic gradient bayesian optimal experimental designs for simulation-based inference |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10327247/ https://www.ncbi.nlm.nih.gov/pubmed/37426454 |
work_keys_str_mv | AT zaballavincentd stochasticgradientbayesianoptimalexperimentaldesignsforsimulationbasedinference AT huielliote stochasticgradientbayesianoptimalexperimentaldesignsforsimulationbasedinference |