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Basic Research Protocol: Exome Sequencing in Adults With Loin Pain Hematuria Syndrome: A Pilot Study
BACKGROUND: Loin pain hematuria syndrome (LPHS) is a poorly understood clinical syndrome characterized by hematuria and either unilateral or bilateral severe kidney pain in the absence of identifiable urological disease. Loin pain hematuria syndrome imposes a significant health and economic impact w...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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SAGE Publications
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10328052/ https://www.ncbi.nlm.nih.gov/pubmed/37426491 http://dx.doi.org/10.1177/20543581231183856 |
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author | Sharma, Aditi Lanktree, Matthew B. Liskowich, Sarah Dokouhaki, Pouneh Prasad, Bhanu |
author_facet | Sharma, Aditi Lanktree, Matthew B. Liskowich, Sarah Dokouhaki, Pouneh Prasad, Bhanu |
author_sort | Sharma, Aditi |
collection | PubMed |
description | BACKGROUND: Loin pain hematuria syndrome (LPHS) is a poorly understood clinical syndrome characterized by hematuria and either unilateral or bilateral severe kidney pain in the absence of identifiable urological disease. Loin pain hematuria syndrome imposes a significant health and economic impact with a loss of productivity and quality of life in a young population. Owing to an incomplete understanding of its pathophysiology, treatment has been limited to nonspecific pain management. Nearly 60 years after its initial description, we are no further ahead in understanding the molecular pathways involved in LPHS. OBJECTIVE: To outline the study design for exome sequencing in adults with LPHS and their families. METHODS: In this single-center case series, 24 patients with LPHS and 2 additional first-degree family members per participant will be recruited. DNA extracted from venous blood samples will undergo exome sequencing on the Illumina NovaSeq 6000 System at 100× depth and will be assessed for pathogenic variants in genes associated with hematuria (number of genes in: glomerular endothelium [n = 10] and basement membrane [n = 8]), and pain pathways (number of genes in: pain transduction [n = 17], conduction [n = 8], synaptic transmission [n = 37], and modulation [n = 27]). We will further examine identified potentially pathogenic variants that co-segregate with LPHS features among affected families. CONCLUSIONS: This pilot study may identify new directions for an investigation into the molecular mechanisms underlying LPHS. |
format | Online Article Text |
id | pubmed-10328052 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | SAGE Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-103280522023-07-08 Basic Research Protocol: Exome Sequencing in Adults With Loin Pain Hematuria Syndrome: A Pilot Study Sharma, Aditi Lanktree, Matthew B. Liskowich, Sarah Dokouhaki, Pouneh Prasad, Bhanu Can J Kidney Health Dis Basic Research Protocol BACKGROUND: Loin pain hematuria syndrome (LPHS) is a poorly understood clinical syndrome characterized by hematuria and either unilateral or bilateral severe kidney pain in the absence of identifiable urological disease. Loin pain hematuria syndrome imposes a significant health and economic impact with a loss of productivity and quality of life in a young population. Owing to an incomplete understanding of its pathophysiology, treatment has been limited to nonspecific pain management. Nearly 60 years after its initial description, we are no further ahead in understanding the molecular pathways involved in LPHS. OBJECTIVE: To outline the study design for exome sequencing in adults with LPHS and their families. METHODS: In this single-center case series, 24 patients with LPHS and 2 additional first-degree family members per participant will be recruited. DNA extracted from venous blood samples will undergo exome sequencing on the Illumina NovaSeq 6000 System at 100× depth and will be assessed for pathogenic variants in genes associated with hematuria (number of genes in: glomerular endothelium [n = 10] and basement membrane [n = 8]), and pain pathways (number of genes in: pain transduction [n = 17], conduction [n = 8], synaptic transmission [n = 37], and modulation [n = 27]). We will further examine identified potentially pathogenic variants that co-segregate with LPHS features among affected families. CONCLUSIONS: This pilot study may identify new directions for an investigation into the molecular mechanisms underlying LPHS. SAGE Publications 2023-07-03 /pmc/articles/PMC10328052/ /pubmed/37426491 http://dx.doi.org/10.1177/20543581231183856 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by-nc/4.0/This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (https://creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access page(https://us.sagepub.com/en-us/nam/open-access-at-sage). |
spellingShingle | Basic Research Protocol Sharma, Aditi Lanktree, Matthew B. Liskowich, Sarah Dokouhaki, Pouneh Prasad, Bhanu Basic Research Protocol: Exome Sequencing in Adults With Loin Pain Hematuria Syndrome: A Pilot Study |
title | Basic Research Protocol: Exome Sequencing in Adults With Loin Pain Hematuria Syndrome: A Pilot Study |
title_full | Basic Research Protocol: Exome Sequencing in Adults With Loin Pain Hematuria Syndrome: A Pilot Study |
title_fullStr | Basic Research Protocol: Exome Sequencing in Adults With Loin Pain Hematuria Syndrome: A Pilot Study |
title_full_unstemmed | Basic Research Protocol: Exome Sequencing in Adults With Loin Pain Hematuria Syndrome: A Pilot Study |
title_short | Basic Research Protocol: Exome Sequencing in Adults With Loin Pain Hematuria Syndrome: A Pilot Study |
title_sort | basic research protocol: exome sequencing in adults with loin pain hematuria syndrome: a pilot study |
topic | Basic Research Protocol |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10328052/ https://www.ncbi.nlm.nih.gov/pubmed/37426491 http://dx.doi.org/10.1177/20543581231183856 |
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