Cargando…

Dicer structure and function: conserved and evolving features

RNase III Dicer produces small RNAs guiding sequence‐specific regulations, with important biological roles in eukaryotes. Major Dicer‐dependent mechanisms are RNA interference (RNAi) and microRNA (miRNA) pathways, which employ distinct types of small RNAs. Small interfering RNAs (siRNAs) for RNAi ar...

Descripción completa

Detalles Bibliográficos
Autores principales: Zapletal, David, Kubicek, Karel, Svoboda, Petr, Stefl, Richard
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10328071/
https://www.ncbi.nlm.nih.gov/pubmed/37310138
http://dx.doi.org/10.15252/embr.202357215
_version_ 1785069721408765952
author Zapletal, David
Kubicek, Karel
Svoboda, Petr
Stefl, Richard
author_facet Zapletal, David
Kubicek, Karel
Svoboda, Petr
Stefl, Richard
author_sort Zapletal, David
collection PubMed
description RNase III Dicer produces small RNAs guiding sequence‐specific regulations, with important biological roles in eukaryotes. Major Dicer‐dependent mechanisms are RNA interference (RNAi) and microRNA (miRNA) pathways, which employ distinct types of small RNAs. Small interfering RNAs (siRNAs) for RNAi are produced by Dicer from long double‐stranded RNA (dsRNA) as a pool of different small RNAs. In contrast, miRNAs have specific sequences because they are precisely cleaved out from small hairpin precursors. Some Dicer homologs efficiently generate both, siRNAs and miRNAs, while others are adapted for biogenesis of one small RNA type. Here, we review the wealth of recent structural analyses of animal and plant Dicers, which have revealed how different domains and their adaptations contribute to substrate recognition and cleavage in different organisms and pathways. These data imply that siRNA generation was Dicer's ancestral role and that miRNA biogenesis relies on derived features. While the key element of functional divergence is a RIG‐I‐like helicase domain, Dicer‐mediated small RNA biogenesis also documents the impressive functional versatility of the dsRNA‐binding domain.
format Online
Article
Text
id pubmed-10328071
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-103280712023-07-08 Dicer structure and function: conserved and evolving features Zapletal, David Kubicek, Karel Svoboda, Petr Stefl, Richard EMBO Rep Review RNase III Dicer produces small RNAs guiding sequence‐specific regulations, with important biological roles in eukaryotes. Major Dicer‐dependent mechanisms are RNA interference (RNAi) and microRNA (miRNA) pathways, which employ distinct types of small RNAs. Small interfering RNAs (siRNAs) for RNAi are produced by Dicer from long double‐stranded RNA (dsRNA) as a pool of different small RNAs. In contrast, miRNAs have specific sequences because they are precisely cleaved out from small hairpin precursors. Some Dicer homologs efficiently generate both, siRNAs and miRNAs, while others are adapted for biogenesis of one small RNA type. Here, we review the wealth of recent structural analyses of animal and plant Dicers, which have revealed how different domains and their adaptations contribute to substrate recognition and cleavage in different organisms and pathways. These data imply that siRNA generation was Dicer's ancestral role and that miRNA biogenesis relies on derived features. While the key element of functional divergence is a RIG‐I‐like helicase domain, Dicer‐mediated small RNA biogenesis also documents the impressive functional versatility of the dsRNA‐binding domain. John Wiley and Sons Inc. 2023-06-13 /pmc/articles/PMC10328071/ /pubmed/37310138 http://dx.doi.org/10.15252/embr.202357215 Text en © 2023 The Authors. Published under the terms of the CC BY 4.0 license. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Review
Zapletal, David
Kubicek, Karel
Svoboda, Petr
Stefl, Richard
Dicer structure and function: conserved and evolving features
title Dicer structure and function: conserved and evolving features
title_full Dicer structure and function: conserved and evolving features
title_fullStr Dicer structure and function: conserved and evolving features
title_full_unstemmed Dicer structure and function: conserved and evolving features
title_short Dicer structure and function: conserved and evolving features
title_sort dicer structure and function: conserved and evolving features
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10328071/
https://www.ncbi.nlm.nih.gov/pubmed/37310138
http://dx.doi.org/10.15252/embr.202357215
work_keys_str_mv AT zapletaldavid dicerstructureandfunctionconservedandevolvingfeatures
AT kubicekkarel dicerstructureandfunctionconservedandevolvingfeatures
AT svobodapetr dicerstructureandfunctionconservedandevolvingfeatures
AT steflrichard dicerstructureandfunctionconservedandevolvingfeatures