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Bayesian function registration with random truncation

In this work, we develop a new set of Bayesian models to perform registration of real-valued functions. A Gaussian process prior is assigned to the parameter space of time warping functions, and a Markov chain Monte Carlo (MCMC) algorithm is utilized to explore the posterior distribution. While the...

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Detalles Bibliográficos
Autores principales: Lu, Yi, Herbei, Radu, Kurtek, Sebastian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10328359/
https://www.ncbi.nlm.nih.gov/pubmed/37418392
http://dx.doi.org/10.1371/journal.pone.0287734
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author Lu, Yi
Herbei, Radu
Kurtek, Sebastian
author_facet Lu, Yi
Herbei, Radu
Kurtek, Sebastian
author_sort Lu, Yi
collection PubMed
description In this work, we develop a new set of Bayesian models to perform registration of real-valued functions. A Gaussian process prior is assigned to the parameter space of time warping functions, and a Markov chain Monte Carlo (MCMC) algorithm is utilized to explore the posterior distribution. While the proposed model can be defined on the infinite-dimensional function space in theory, dimension reduction is needed in practice because one cannot store an infinite-dimensional function on the computer. Existing Bayesian models often rely on some pre-specified, fixed truncation rule to achieve dimension reduction, either by fixing the grid size or the number of basis functions used to represent a functional object. In comparison, the new models in this paper randomize the truncation rule. Benefits of the new models include the ability to make inference on the smoothness of the functional parameters, a data-informative feature of the truncation rule, and the flexibility to control the amount of shape-alteration in the registration process. For instance, using both simulated and real data, we show that when the observed functions exhibit more local features, the posterior distribution on the warping functions automatically concentrates on a larger number of basis functions. Supporting materials including code and data to perform registration and reproduce some of the results presented herein are available online.
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spelling pubmed-103283592023-07-08 Bayesian function registration with random truncation Lu, Yi Herbei, Radu Kurtek, Sebastian PLoS One Research Article In this work, we develop a new set of Bayesian models to perform registration of real-valued functions. A Gaussian process prior is assigned to the parameter space of time warping functions, and a Markov chain Monte Carlo (MCMC) algorithm is utilized to explore the posterior distribution. While the proposed model can be defined on the infinite-dimensional function space in theory, dimension reduction is needed in practice because one cannot store an infinite-dimensional function on the computer. Existing Bayesian models often rely on some pre-specified, fixed truncation rule to achieve dimension reduction, either by fixing the grid size or the number of basis functions used to represent a functional object. In comparison, the new models in this paper randomize the truncation rule. Benefits of the new models include the ability to make inference on the smoothness of the functional parameters, a data-informative feature of the truncation rule, and the flexibility to control the amount of shape-alteration in the registration process. For instance, using both simulated and real data, we show that when the observed functions exhibit more local features, the posterior distribution on the warping functions automatically concentrates on a larger number of basis functions. Supporting materials including code and data to perform registration and reproduce some of the results presented herein are available online. Public Library of Science 2023-07-07 /pmc/articles/PMC10328359/ /pubmed/37418392 http://dx.doi.org/10.1371/journal.pone.0287734 Text en © 2023 Lu et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Lu, Yi
Herbei, Radu
Kurtek, Sebastian
Bayesian function registration with random truncation
title Bayesian function registration with random truncation
title_full Bayesian function registration with random truncation
title_fullStr Bayesian function registration with random truncation
title_full_unstemmed Bayesian function registration with random truncation
title_short Bayesian function registration with random truncation
title_sort bayesian function registration with random truncation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10328359/
https://www.ncbi.nlm.nih.gov/pubmed/37418392
http://dx.doi.org/10.1371/journal.pone.0287734
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