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Bayesian function registration with random truncation
In this work, we develop a new set of Bayesian models to perform registration of real-valued functions. A Gaussian process prior is assigned to the parameter space of time warping functions, and a Markov chain Monte Carlo (MCMC) algorithm is utilized to explore the posterior distribution. While the...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10328359/ https://www.ncbi.nlm.nih.gov/pubmed/37418392 http://dx.doi.org/10.1371/journal.pone.0287734 |
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author | Lu, Yi Herbei, Radu Kurtek, Sebastian |
author_facet | Lu, Yi Herbei, Radu Kurtek, Sebastian |
author_sort | Lu, Yi |
collection | PubMed |
description | In this work, we develop a new set of Bayesian models to perform registration of real-valued functions. A Gaussian process prior is assigned to the parameter space of time warping functions, and a Markov chain Monte Carlo (MCMC) algorithm is utilized to explore the posterior distribution. While the proposed model can be defined on the infinite-dimensional function space in theory, dimension reduction is needed in practice because one cannot store an infinite-dimensional function on the computer. Existing Bayesian models often rely on some pre-specified, fixed truncation rule to achieve dimension reduction, either by fixing the grid size or the number of basis functions used to represent a functional object. In comparison, the new models in this paper randomize the truncation rule. Benefits of the new models include the ability to make inference on the smoothness of the functional parameters, a data-informative feature of the truncation rule, and the flexibility to control the amount of shape-alteration in the registration process. For instance, using both simulated and real data, we show that when the observed functions exhibit more local features, the posterior distribution on the warping functions automatically concentrates on a larger number of basis functions. Supporting materials including code and data to perform registration and reproduce some of the results presented herein are available online. |
format | Online Article Text |
id | pubmed-10328359 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-103283592023-07-08 Bayesian function registration with random truncation Lu, Yi Herbei, Radu Kurtek, Sebastian PLoS One Research Article In this work, we develop a new set of Bayesian models to perform registration of real-valued functions. A Gaussian process prior is assigned to the parameter space of time warping functions, and a Markov chain Monte Carlo (MCMC) algorithm is utilized to explore the posterior distribution. While the proposed model can be defined on the infinite-dimensional function space in theory, dimension reduction is needed in practice because one cannot store an infinite-dimensional function on the computer. Existing Bayesian models often rely on some pre-specified, fixed truncation rule to achieve dimension reduction, either by fixing the grid size or the number of basis functions used to represent a functional object. In comparison, the new models in this paper randomize the truncation rule. Benefits of the new models include the ability to make inference on the smoothness of the functional parameters, a data-informative feature of the truncation rule, and the flexibility to control the amount of shape-alteration in the registration process. For instance, using both simulated and real data, we show that when the observed functions exhibit more local features, the posterior distribution on the warping functions automatically concentrates on a larger number of basis functions. Supporting materials including code and data to perform registration and reproduce some of the results presented herein are available online. Public Library of Science 2023-07-07 /pmc/articles/PMC10328359/ /pubmed/37418392 http://dx.doi.org/10.1371/journal.pone.0287734 Text en © 2023 Lu et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Lu, Yi Herbei, Radu Kurtek, Sebastian Bayesian function registration with random truncation |
title | Bayesian function registration with random truncation |
title_full | Bayesian function registration with random truncation |
title_fullStr | Bayesian function registration with random truncation |
title_full_unstemmed | Bayesian function registration with random truncation |
title_short | Bayesian function registration with random truncation |
title_sort | bayesian function registration with random truncation |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10328359/ https://www.ncbi.nlm.nih.gov/pubmed/37418392 http://dx.doi.org/10.1371/journal.pone.0287734 |
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