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Cloning and expression analysis of VrNAC13 gene in mung bean

To explore the role of NAC transcription factors in mung bean (Vigna ratiata), we here comprehensively analyzed VrNAC13 structure and expression patterns in the mung bean cultivar “Yulin No.1”. The nucleotide sequence of VrNAC13 (GenBank accession number xp014518431.1) was determined by cloning and...

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Autores principales: Zhang, Siyu, Ai, Jing, Guo, Yaning, Bai, Yu, Yao, Han, Wang, Fugang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: De Gruyter 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10329274/
https://www.ncbi.nlm.nih.gov/pubmed/37426623
http://dx.doi.org/10.1515/biol-2022-0627
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author Zhang, Siyu
Ai, Jing
Guo, Yaning
Bai, Yu
Yao, Han
Wang, Fugang
author_facet Zhang, Siyu
Ai, Jing
Guo, Yaning
Bai, Yu
Yao, Han
Wang, Fugang
author_sort Zhang, Siyu
collection PubMed
description To explore the role of NAC transcription factors in mung bean (Vigna ratiata), we here comprehensively analyzed VrNAC13 structure and expression patterns in the mung bean cultivar “Yulin No.1”. The nucleotide sequence of VrNAC13 (GenBank accession number xp014518431.1) was determined by cloning and sequencing the gene. A predicted transcriptional activation domain in VrNAC13 was validated with a yeast one-hybrid assay. The composition and functional characteristics of VrNAC13 were analyzed using basic bioinformatics techniques, and the expression characteristics of VrNAC13 were analyzed via quantitative reverse transcription-PCR. The results showed that VrNAC13 was 1,068 bp in length and encoded a product of 355 amino acids. VrNAC13 was predicted to contain a NAM domain and to belong to the NAC transcription factor family. The protein was hydrophilic and contained several threonine phosphorylation sites. Phylogenetic analysis showed that VrNAC13 was highly similar in sequence to two Arabidopsis thaliana NAC proteins; we hypothesize that VrNAC13 may perform functions in mung bean similar to those of the two closely related proteins in Arabidopsis. Promoter analysis of VrNAC13 revealed cis-acting elements predicted to respond to abscisic acid (ABA), gibberellin, auxin, light, drought, low temperature, and other stressors. VrNAC13 was most highly expressed in the leaves and expressed at very low levels in the stem and root. It was experimentally determined to be induced by drought and ABA. Based on these results, VrNAC13 appears to regulate stress resistance in mung bean.
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spelling pubmed-103292742023-07-09 Cloning and expression analysis of VrNAC13 gene in mung bean Zhang, Siyu Ai, Jing Guo, Yaning Bai, Yu Yao, Han Wang, Fugang Open Life Sci Research Article To explore the role of NAC transcription factors in mung bean (Vigna ratiata), we here comprehensively analyzed VrNAC13 structure and expression patterns in the mung bean cultivar “Yulin No.1”. The nucleotide sequence of VrNAC13 (GenBank accession number xp014518431.1) was determined by cloning and sequencing the gene. A predicted transcriptional activation domain in VrNAC13 was validated with a yeast one-hybrid assay. The composition and functional characteristics of VrNAC13 were analyzed using basic bioinformatics techniques, and the expression characteristics of VrNAC13 were analyzed via quantitative reverse transcription-PCR. The results showed that VrNAC13 was 1,068 bp in length and encoded a product of 355 amino acids. VrNAC13 was predicted to contain a NAM domain and to belong to the NAC transcription factor family. The protein was hydrophilic and contained several threonine phosphorylation sites. Phylogenetic analysis showed that VrNAC13 was highly similar in sequence to two Arabidopsis thaliana NAC proteins; we hypothesize that VrNAC13 may perform functions in mung bean similar to those of the two closely related proteins in Arabidopsis. Promoter analysis of VrNAC13 revealed cis-acting elements predicted to respond to abscisic acid (ABA), gibberellin, auxin, light, drought, low temperature, and other stressors. VrNAC13 was most highly expressed in the leaves and expressed at very low levels in the stem and root. It was experimentally determined to be induced by drought and ABA. Based on these results, VrNAC13 appears to regulate stress resistance in mung bean. De Gruyter 2023-07-06 /pmc/articles/PMC10329274/ /pubmed/37426623 http://dx.doi.org/10.1515/biol-2022-0627 Text en © 2023 the author(s), published by De Gruyter https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License.
spellingShingle Research Article
Zhang, Siyu
Ai, Jing
Guo, Yaning
Bai, Yu
Yao, Han
Wang, Fugang
Cloning and expression analysis of VrNAC13 gene in mung bean
title Cloning and expression analysis of VrNAC13 gene in mung bean
title_full Cloning and expression analysis of VrNAC13 gene in mung bean
title_fullStr Cloning and expression analysis of VrNAC13 gene in mung bean
title_full_unstemmed Cloning and expression analysis of VrNAC13 gene in mung bean
title_short Cloning and expression analysis of VrNAC13 gene in mung bean
title_sort cloning and expression analysis of vrnac13 gene in mung bean
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10329274/
https://www.ncbi.nlm.nih.gov/pubmed/37426623
http://dx.doi.org/10.1515/biol-2022-0627
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