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Identification of sterile a-motif domain-containing 9-like as a potential biomarker in patients with cutaneous melanoma

Skin cutaneous melanoma (SKCM) is one of the most aggressive malignancies, accounting for approximately 75% of skin cancer-related fatalities annually. Sterile a-motif domain-containing 9-like (SAMD9L) has been found to regulate cell proliferation and suppress the neoplastic phenotype, but its speci...

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Autores principales: Ye, Junsen, Tang, Haidan, Xie, Chuanrui, Han, Wei, Shen, Guoliang, Qian, Ying, Xu, Jin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10329423/
https://www.ncbi.nlm.nih.gov/pubmed/37426410
http://dx.doi.org/10.7717/peerj.15634
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author Ye, Junsen
Tang, Haidan
Xie, Chuanrui
Han, Wei
Shen, Guoliang
Qian, Ying
Xu, Jin
author_facet Ye, Junsen
Tang, Haidan
Xie, Chuanrui
Han, Wei
Shen, Guoliang
Qian, Ying
Xu, Jin
author_sort Ye, Junsen
collection PubMed
description Skin cutaneous melanoma (SKCM) is one of the most aggressive malignancies, accounting for approximately 75% of skin cancer-related fatalities annually. Sterile a-motif domain-containing 9-like (SAMD9L) has been found to regulate cell proliferation and suppress the neoplastic phenotype, but its specific role in SKCM remains unknown. To investigate the cancer-associated immunology of SKCM and the role of SAMD9L in tumor progression, we conducted an integrative bioinformatics analysis that revealed elevated expression levels of SAMD9L in SKCM. ROC curves and survival analyses confirmed the considerable diagnostic and prognostic abilities of SAMD9L. Moreover, a real-world cohort of 35 SKCM patients from the First Affiliated Hospital of Soochow University showed that higher expression levels of SAMD9L were associated with better prognosis. We performed validation experiments, including cell culture, generation of lentiviral-transfected SKCM cell lines, cell proliferation assay, and transwell assay, which demonstrated that down-regulation of SAMD9L significantly promoted proliferation and migration capacities of SKCM cells. Additionally, SAMD9L expression was found to be strongly linked to immune infiltration. Our results revealed a positive correlation between SAMD9L and XAF1 expression, suggesting that SAMD9L may serve as a prospective prognostic indicator of SKCM with co-expressed XAF1 gene. In summary, our findings indicate that SAMD9L may serve as a promising prognostic and therapeutic biomarker and play a critical role in tumor-immune interactions in SKCM.
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spelling pubmed-103294232023-07-09 Identification of sterile a-motif domain-containing 9-like as a potential biomarker in patients with cutaneous melanoma Ye, Junsen Tang, Haidan Xie, Chuanrui Han, Wei Shen, Guoliang Qian, Ying Xu, Jin PeerJ Bioinformatics Skin cutaneous melanoma (SKCM) is one of the most aggressive malignancies, accounting for approximately 75% of skin cancer-related fatalities annually. Sterile a-motif domain-containing 9-like (SAMD9L) has been found to regulate cell proliferation and suppress the neoplastic phenotype, but its specific role in SKCM remains unknown. To investigate the cancer-associated immunology of SKCM and the role of SAMD9L in tumor progression, we conducted an integrative bioinformatics analysis that revealed elevated expression levels of SAMD9L in SKCM. ROC curves and survival analyses confirmed the considerable diagnostic and prognostic abilities of SAMD9L. Moreover, a real-world cohort of 35 SKCM patients from the First Affiliated Hospital of Soochow University showed that higher expression levels of SAMD9L were associated with better prognosis. We performed validation experiments, including cell culture, generation of lentiviral-transfected SKCM cell lines, cell proliferation assay, and transwell assay, which demonstrated that down-regulation of SAMD9L significantly promoted proliferation and migration capacities of SKCM cells. Additionally, SAMD9L expression was found to be strongly linked to immune infiltration. Our results revealed a positive correlation between SAMD9L and XAF1 expression, suggesting that SAMD9L may serve as a prospective prognostic indicator of SKCM with co-expressed XAF1 gene. In summary, our findings indicate that SAMD9L may serve as a promising prognostic and therapeutic biomarker and play a critical role in tumor-immune interactions in SKCM. PeerJ Inc. 2023-07-05 /pmc/articles/PMC10329423/ /pubmed/37426410 http://dx.doi.org/10.7717/peerj.15634 Text en © 2023 Ye et al. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by-nc/4.0/) , which permits using, remixing, and building upon the work non-commercially, as long as it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Ye, Junsen
Tang, Haidan
Xie, Chuanrui
Han, Wei
Shen, Guoliang
Qian, Ying
Xu, Jin
Identification of sterile a-motif domain-containing 9-like as a potential biomarker in patients with cutaneous melanoma
title Identification of sterile a-motif domain-containing 9-like as a potential biomarker in patients with cutaneous melanoma
title_full Identification of sterile a-motif domain-containing 9-like as a potential biomarker in patients with cutaneous melanoma
title_fullStr Identification of sterile a-motif domain-containing 9-like as a potential biomarker in patients with cutaneous melanoma
title_full_unstemmed Identification of sterile a-motif domain-containing 9-like as a potential biomarker in patients with cutaneous melanoma
title_short Identification of sterile a-motif domain-containing 9-like as a potential biomarker in patients with cutaneous melanoma
title_sort identification of sterile a-motif domain-containing 9-like as a potential biomarker in patients with cutaneous melanoma
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10329423/
https://www.ncbi.nlm.nih.gov/pubmed/37426410
http://dx.doi.org/10.7717/peerj.15634
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