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Dual consistent pseudo label generation for multi-source domain adaptation without source data for medical image segmentation

INTRODUCTION: Unsupervised domain adaptation (UDA) aims to adapt a model learned from the source domain to the target domain. Thus, the model can obtain transferable knowledge even in target domain that does not have ground truth in this way. In medical image segmentation scenarios, there exist dive...

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Autores principales: Cai, Binke, Ma, Liyan, Sun, Yan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10330808/
https://www.ncbi.nlm.nih.gov/pubmed/37434767
http://dx.doi.org/10.3389/fnins.2023.1209132
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author Cai, Binke
Ma, Liyan
Sun, Yan
author_facet Cai, Binke
Ma, Liyan
Sun, Yan
author_sort Cai, Binke
collection PubMed
description INTRODUCTION: Unsupervised domain adaptation (UDA) aims to adapt a model learned from the source domain to the target domain. Thus, the model can obtain transferable knowledge even in target domain that does not have ground truth in this way. In medical image segmentation scenarios, there exist diverse data distributions caused by intensity in homogeneities and shape variabilities. But multi source data may not be freely accessible, especially medical images with patient identity information. METHODS: To tackle this issue, we propose a new multi-source and source-free (MSSF) application scenario and a novel domain adaptation framework where in the training stage, we only get access to the well-trained source domain segmentation models without source data. First, we propose a new dual consistency constraint which uses domain-intra and domain-inter consistency to filter those predictions agreed by each individual domain expert and all domain experts. It can serve as a high-quality pseudo label generation method and produce correct supervised signals for target domain supervised learning. Next, we design a progressive entropy loss minimization method to minimize the class-inter distance of features, which is beneficial to enhance domain-intra and domain-inter consistency in turn. RESULTS: Extensive experiments are performed for retinal vessel segmentation under MSSF condition and our approach produces impressive performance. The sensitivity metric of our approach is highest and it surpasses other methods with a large margin. DISCUSSION: It is the first attempt to conduct researches on the retinal vessel segmentation task under multi-source and source-free scenarios. In medical applications, such adaptation method can avoid the privacy issue. Furthermore, how to balance the high sensitivity and high accuracy need to be further considered.
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spelling pubmed-103308082023-07-11 Dual consistent pseudo label generation for multi-source domain adaptation without source data for medical image segmentation Cai, Binke Ma, Liyan Sun, Yan Front Neurosci Neuroscience INTRODUCTION: Unsupervised domain adaptation (UDA) aims to adapt a model learned from the source domain to the target domain. Thus, the model can obtain transferable knowledge even in target domain that does not have ground truth in this way. In medical image segmentation scenarios, there exist diverse data distributions caused by intensity in homogeneities and shape variabilities. But multi source data may not be freely accessible, especially medical images with patient identity information. METHODS: To tackle this issue, we propose a new multi-source and source-free (MSSF) application scenario and a novel domain adaptation framework where in the training stage, we only get access to the well-trained source domain segmentation models without source data. First, we propose a new dual consistency constraint which uses domain-intra and domain-inter consistency to filter those predictions agreed by each individual domain expert and all domain experts. It can serve as a high-quality pseudo label generation method and produce correct supervised signals for target domain supervised learning. Next, we design a progressive entropy loss minimization method to minimize the class-inter distance of features, which is beneficial to enhance domain-intra and domain-inter consistency in turn. RESULTS: Extensive experiments are performed for retinal vessel segmentation under MSSF condition and our approach produces impressive performance. The sensitivity metric of our approach is highest and it surpasses other methods with a large margin. DISCUSSION: It is the first attempt to conduct researches on the retinal vessel segmentation task under multi-source and source-free scenarios. In medical applications, such adaptation method can avoid the privacy issue. Furthermore, how to balance the high sensitivity and high accuracy need to be further considered. Frontiers Media S.A. 2023-06-26 /pmc/articles/PMC10330808/ /pubmed/37434767 http://dx.doi.org/10.3389/fnins.2023.1209132 Text en Copyright © 2023 Cai, Ma and Sun. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Cai, Binke
Ma, Liyan
Sun, Yan
Dual consistent pseudo label generation for multi-source domain adaptation without source data for medical image segmentation
title Dual consistent pseudo label generation for multi-source domain adaptation without source data for medical image segmentation
title_full Dual consistent pseudo label generation for multi-source domain adaptation without source data for medical image segmentation
title_fullStr Dual consistent pseudo label generation for multi-source domain adaptation without source data for medical image segmentation
title_full_unstemmed Dual consistent pseudo label generation for multi-source domain adaptation without source data for medical image segmentation
title_short Dual consistent pseudo label generation for multi-source domain adaptation without source data for medical image segmentation
title_sort dual consistent pseudo label generation for multi-source domain adaptation without source data for medical image segmentation
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10330808/
https://www.ncbi.nlm.nih.gov/pubmed/37434767
http://dx.doi.org/10.3389/fnins.2023.1209132
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