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Anatomy-aware self-supervised learning for anomaly detection in chest radiographs

In this study, we present a self-supervised learning (SSL)-based model that enables anatomical structure-based unsupervised anomaly detection (UAD). The model employs an anatomy-aware pasting (AnatPaste) augmentation tool that uses a threshold-based lung segmentation pretext task to create anomalies...

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Detalles Bibliográficos
Autores principales: Sato, Junya, Suzuki, Yuki, Wataya, Tomohiro, Nishigaki, Daiki, Kita, Kosuke, Yamagata, Kazuki, Tomiyama, Noriyuki, Kido, Shoji
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10331430/
https://www.ncbi.nlm.nih.gov/pubmed/37434699
http://dx.doi.org/10.1016/j.isci.2023.107086
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author Sato, Junya
Suzuki, Yuki
Wataya, Tomohiro
Nishigaki, Daiki
Kita, Kosuke
Yamagata, Kazuki
Tomiyama, Noriyuki
Kido, Shoji
author_facet Sato, Junya
Suzuki, Yuki
Wataya, Tomohiro
Nishigaki, Daiki
Kita, Kosuke
Yamagata, Kazuki
Tomiyama, Noriyuki
Kido, Shoji
author_sort Sato, Junya
collection PubMed
description In this study, we present a self-supervised learning (SSL)-based model that enables anatomical structure-based unsupervised anomaly detection (UAD). The model employs an anatomy-aware pasting (AnatPaste) augmentation tool that uses a threshold-based lung segmentation pretext task to create anomalies in normal chest radiographs used for model pretraining. These anomalies are similar to real anomalies and help the model recognize them. We evaluate our model using three open-source chest radiograph datasets. Our model exhibits area under curves of 92.1%, 78.7%, and 81.9%, which are the highest among those of existing UAD models. To the best of our knowledge, this is the first SSL model to employ anatomical information from segmentation as a pretext task. The performance of AnatPaste shows that incorporating anatomical information into SSL can effectively improve accuracy.
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spelling pubmed-103314302023-07-11 Anatomy-aware self-supervised learning for anomaly detection in chest radiographs Sato, Junya Suzuki, Yuki Wataya, Tomohiro Nishigaki, Daiki Kita, Kosuke Yamagata, Kazuki Tomiyama, Noriyuki Kido, Shoji iScience Article In this study, we present a self-supervised learning (SSL)-based model that enables anatomical structure-based unsupervised anomaly detection (UAD). The model employs an anatomy-aware pasting (AnatPaste) augmentation tool that uses a threshold-based lung segmentation pretext task to create anomalies in normal chest radiographs used for model pretraining. These anomalies are similar to real anomalies and help the model recognize them. We evaluate our model using three open-source chest radiograph datasets. Our model exhibits area under curves of 92.1%, 78.7%, and 81.9%, which are the highest among those of existing UAD models. To the best of our knowledge, this is the first SSL model to employ anatomical information from segmentation as a pretext task. The performance of AnatPaste shows that incorporating anatomical information into SSL can effectively improve accuracy. Elsevier 2023-06-15 /pmc/articles/PMC10331430/ /pubmed/37434699 http://dx.doi.org/10.1016/j.isci.2023.107086 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Sato, Junya
Suzuki, Yuki
Wataya, Tomohiro
Nishigaki, Daiki
Kita, Kosuke
Yamagata, Kazuki
Tomiyama, Noriyuki
Kido, Shoji
Anatomy-aware self-supervised learning for anomaly detection in chest radiographs
title Anatomy-aware self-supervised learning for anomaly detection in chest radiographs
title_full Anatomy-aware self-supervised learning for anomaly detection in chest radiographs
title_fullStr Anatomy-aware self-supervised learning for anomaly detection in chest radiographs
title_full_unstemmed Anatomy-aware self-supervised learning for anomaly detection in chest radiographs
title_short Anatomy-aware self-supervised learning for anomaly detection in chest radiographs
title_sort anatomy-aware self-supervised learning for anomaly detection in chest radiographs
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10331430/
https://www.ncbi.nlm.nih.gov/pubmed/37434699
http://dx.doi.org/10.1016/j.isci.2023.107086
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