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Anatomy-aware self-supervised learning for anomaly detection in chest radiographs
In this study, we present a self-supervised learning (SSL)-based model that enables anatomical structure-based unsupervised anomaly detection (UAD). The model employs an anatomy-aware pasting (AnatPaste) augmentation tool that uses a threshold-based lung segmentation pretext task to create anomalies...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10331430/ https://www.ncbi.nlm.nih.gov/pubmed/37434699 http://dx.doi.org/10.1016/j.isci.2023.107086 |
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author | Sato, Junya Suzuki, Yuki Wataya, Tomohiro Nishigaki, Daiki Kita, Kosuke Yamagata, Kazuki Tomiyama, Noriyuki Kido, Shoji |
author_facet | Sato, Junya Suzuki, Yuki Wataya, Tomohiro Nishigaki, Daiki Kita, Kosuke Yamagata, Kazuki Tomiyama, Noriyuki Kido, Shoji |
author_sort | Sato, Junya |
collection | PubMed |
description | In this study, we present a self-supervised learning (SSL)-based model that enables anatomical structure-based unsupervised anomaly detection (UAD). The model employs an anatomy-aware pasting (AnatPaste) augmentation tool that uses a threshold-based lung segmentation pretext task to create anomalies in normal chest radiographs used for model pretraining. These anomalies are similar to real anomalies and help the model recognize them. We evaluate our model using three open-source chest radiograph datasets. Our model exhibits area under curves of 92.1%, 78.7%, and 81.9%, which are the highest among those of existing UAD models. To the best of our knowledge, this is the first SSL model to employ anatomical information from segmentation as a pretext task. The performance of AnatPaste shows that incorporating anatomical information into SSL can effectively improve accuracy. |
format | Online Article Text |
id | pubmed-10331430 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-103314302023-07-11 Anatomy-aware self-supervised learning for anomaly detection in chest radiographs Sato, Junya Suzuki, Yuki Wataya, Tomohiro Nishigaki, Daiki Kita, Kosuke Yamagata, Kazuki Tomiyama, Noriyuki Kido, Shoji iScience Article In this study, we present a self-supervised learning (SSL)-based model that enables anatomical structure-based unsupervised anomaly detection (UAD). The model employs an anatomy-aware pasting (AnatPaste) augmentation tool that uses a threshold-based lung segmentation pretext task to create anomalies in normal chest radiographs used for model pretraining. These anomalies are similar to real anomalies and help the model recognize them. We evaluate our model using three open-source chest radiograph datasets. Our model exhibits area under curves of 92.1%, 78.7%, and 81.9%, which are the highest among those of existing UAD models. To the best of our knowledge, this is the first SSL model to employ anatomical information from segmentation as a pretext task. The performance of AnatPaste shows that incorporating anatomical information into SSL can effectively improve accuracy. Elsevier 2023-06-15 /pmc/articles/PMC10331430/ /pubmed/37434699 http://dx.doi.org/10.1016/j.isci.2023.107086 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Sato, Junya Suzuki, Yuki Wataya, Tomohiro Nishigaki, Daiki Kita, Kosuke Yamagata, Kazuki Tomiyama, Noriyuki Kido, Shoji Anatomy-aware self-supervised learning for anomaly detection in chest radiographs |
title | Anatomy-aware self-supervised learning for anomaly detection in chest radiographs |
title_full | Anatomy-aware self-supervised learning for anomaly detection in chest radiographs |
title_fullStr | Anatomy-aware self-supervised learning for anomaly detection in chest radiographs |
title_full_unstemmed | Anatomy-aware self-supervised learning for anomaly detection in chest radiographs |
title_short | Anatomy-aware self-supervised learning for anomaly detection in chest radiographs |
title_sort | anatomy-aware self-supervised learning for anomaly detection in chest radiographs |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10331430/ https://www.ncbi.nlm.nih.gov/pubmed/37434699 http://dx.doi.org/10.1016/j.isci.2023.107086 |
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