Cargando…

Electron/Hole Mobilities of Periodic DNA and Nucleobase Structures from Large-Scale DFT Calculations

[Image: see text] Electron/hole transfer mechanisms in DNA and polynucleotide structures continue to garner considerable interest as emerging charge-transport systems and molecular electronics. To shed mechanistic insight into these electronic properties, we carried out large-scale density functiona...

Descripción completa

Detalles Bibliográficos
Autores principales: Kwon, Hyuna, Kumar, Anshuman, Del Ben, Mauro, Wong, Bryan M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10331729/
https://www.ncbi.nlm.nih.gov/pubmed/37349270
http://dx.doi.org/10.1021/acs.jpcb.2c09141
_version_ 1785070304223035392
author Kwon, Hyuna
Kumar, Anshuman
Del Ben, Mauro
Wong, Bryan M.
author_facet Kwon, Hyuna
Kumar, Anshuman
Del Ben, Mauro
Wong, Bryan M.
author_sort Kwon, Hyuna
collection PubMed
description [Image: see text] Electron/hole transfer mechanisms in DNA and polynucleotide structures continue to garner considerable interest as emerging charge-transport systems and molecular electronics. To shed mechanistic insight into these electronic properties, we carried out large-scale density functional theory (DFT) calculations (up to 650 atoms) to systematically analyze the structural and electron/hole transport properties of fully periodic single- and double-stranded DNA. We examined the performance of various exchange–correlation functionals (LDA, BLYP, B3LYP, and B3LYP-D) and found that single-stranded thymine (T) and cytosine (C) are predominantly hole conductors, whereas single-stranded adenine (A) and guanine (G) are better electron conductors. For double-stranded DNA structures, the periodic A-T and G-C electronic band structures undergo a significant renormalization, which causes hole transport to only occur on the A and G nucleobases. Our calculations (1) provide new benchmarks for periodic nucleobase structures using dispersion-corrected hybrid functionals with large basis sets and (2) highlight the importance of dispersion effects for obtaining accurate geometries and electron/hole mobilities in these extended systems.
format Online
Article
Text
id pubmed-10331729
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-103317292023-07-11 Electron/Hole Mobilities of Periodic DNA and Nucleobase Structures from Large-Scale DFT Calculations Kwon, Hyuna Kumar, Anshuman Del Ben, Mauro Wong, Bryan M. J Phys Chem B [Image: see text] Electron/hole transfer mechanisms in DNA and polynucleotide structures continue to garner considerable interest as emerging charge-transport systems and molecular electronics. To shed mechanistic insight into these electronic properties, we carried out large-scale density functional theory (DFT) calculations (up to 650 atoms) to systematically analyze the structural and electron/hole transport properties of fully periodic single- and double-stranded DNA. We examined the performance of various exchange–correlation functionals (LDA, BLYP, B3LYP, and B3LYP-D) and found that single-stranded thymine (T) and cytosine (C) are predominantly hole conductors, whereas single-stranded adenine (A) and guanine (G) are better electron conductors. For double-stranded DNA structures, the periodic A-T and G-C electronic band structures undergo a significant renormalization, which causes hole transport to only occur on the A and G nucleobases. Our calculations (1) provide new benchmarks for periodic nucleobase structures using dispersion-corrected hybrid functionals with large basis sets and (2) highlight the importance of dispersion effects for obtaining accurate geometries and electron/hole mobilities in these extended systems. American Chemical Society 2023-06-22 /pmc/articles/PMC10331729/ /pubmed/37349270 http://dx.doi.org/10.1021/acs.jpcb.2c09141 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Kwon, Hyuna
Kumar, Anshuman
Del Ben, Mauro
Wong, Bryan M.
Electron/Hole Mobilities of Periodic DNA and Nucleobase Structures from Large-Scale DFT Calculations
title Electron/Hole Mobilities of Periodic DNA and Nucleobase Structures from Large-Scale DFT Calculations
title_full Electron/Hole Mobilities of Periodic DNA and Nucleobase Structures from Large-Scale DFT Calculations
title_fullStr Electron/Hole Mobilities of Periodic DNA and Nucleobase Structures from Large-Scale DFT Calculations
title_full_unstemmed Electron/Hole Mobilities of Periodic DNA and Nucleobase Structures from Large-Scale DFT Calculations
title_short Electron/Hole Mobilities of Periodic DNA and Nucleobase Structures from Large-Scale DFT Calculations
title_sort electron/hole mobilities of periodic dna and nucleobase structures from large-scale dft calculations
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10331729/
https://www.ncbi.nlm.nih.gov/pubmed/37349270
http://dx.doi.org/10.1021/acs.jpcb.2c09141
work_keys_str_mv AT kwonhyuna electronholemobilitiesofperiodicdnaandnucleobasestructuresfromlargescaledftcalculations
AT kumaranshuman electronholemobilitiesofperiodicdnaandnucleobasestructuresfromlargescaledftcalculations
AT delbenmauro electronholemobilitiesofperiodicdnaandnucleobasestructuresfromlargescaledftcalculations
AT wongbryanm electronholemobilitiesofperiodicdnaandnucleobasestructuresfromlargescaledftcalculations