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Modeling dragonfly population data with a Bayesian bivariate geometric mixed-effects model
We develop a generalized linear mixed model (GLMM) for bivariate count responses for statistically analyzing dragonfly population data from the Northern Netherlands. The populations of the threatened dragonfly species Aeshna viridis were counted in the years 2015–2018 at 17 different locations (pond...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10332241/ https://www.ncbi.nlm.nih.gov/pubmed/37434627 http://dx.doi.org/10.1080/02664763.2022.2068513 |
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author | van Oppen, Yulan B. Milder-Mulderij, Gabi Brochard, Christophe Wiggers, Rink de Vries, Saskia Krijnen, Wim P. Grzegorczyk, Marco A. |
author_facet | van Oppen, Yulan B. Milder-Mulderij, Gabi Brochard, Christophe Wiggers, Rink de Vries, Saskia Krijnen, Wim P. Grzegorczyk, Marco A. |
author_sort | van Oppen, Yulan B. |
collection | PubMed |
description | We develop a generalized linear mixed model (GLMM) for bivariate count responses for statistically analyzing dragonfly population data from the Northern Netherlands. The populations of the threatened dragonfly species Aeshna viridis were counted in the years 2015–2018 at 17 different locations (ponds and ditches). Two different widely applied population size measures were used to quantify the population sizes, namely the number of found exoskeletons (‘exuviae’) and the number of spotted egg-laying females were counted. Since both measures (responses) led to many zero counts but also feature very large counts, our GLMM model builds on a zero-inflated bivariate geometric (ZIBGe) distribution, for which we show that it can be easily parameterized in terms of a correlation parameter and its two marginal medians. We model the medians with linear combinations of fixed (environmental covariates) and random (location-specific intercepts) effects. Modeling the medians yields a decreased sensitivity to overly large counts; in particular, in light of growing marginal zero inflation rates. Because of the relatively small sample size (n = 114) we follow a Bayesian modeling approach and use Metropolis-Hastings Markov Chain Monte Carlo (MCMC) simulations for generating posterior samples. |
format | Online Article Text |
id | pubmed-10332241 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-103322412023-07-11 Modeling dragonfly population data with a Bayesian bivariate geometric mixed-effects model van Oppen, Yulan B. Milder-Mulderij, Gabi Brochard, Christophe Wiggers, Rink de Vries, Saskia Krijnen, Wim P. Grzegorczyk, Marco A. J Appl Stat Articles We develop a generalized linear mixed model (GLMM) for bivariate count responses for statistically analyzing dragonfly population data from the Northern Netherlands. The populations of the threatened dragonfly species Aeshna viridis were counted in the years 2015–2018 at 17 different locations (ponds and ditches). Two different widely applied population size measures were used to quantify the population sizes, namely the number of found exoskeletons (‘exuviae’) and the number of spotted egg-laying females were counted. Since both measures (responses) led to many zero counts but also feature very large counts, our GLMM model builds on a zero-inflated bivariate geometric (ZIBGe) distribution, for which we show that it can be easily parameterized in terms of a correlation parameter and its two marginal medians. We model the medians with linear combinations of fixed (environmental covariates) and random (location-specific intercepts) effects. Modeling the medians yields a decreased sensitivity to overly large counts; in particular, in light of growing marginal zero inflation rates. Because of the relatively small sample size (n = 114) we follow a Bayesian modeling approach and use Metropolis-Hastings Markov Chain Monte Carlo (MCMC) simulations for generating posterior samples. Taylor & Francis 2022-05-06 /pmc/articles/PMC10332241/ /pubmed/37434627 http://dx.doi.org/10.1080/02664763.2022.2068513 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group https://creativecommons.org/licenses/by-nc-nd/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives License (http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) ), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited, and is not altered, transformed, or built upon in any way. |
spellingShingle | Articles van Oppen, Yulan B. Milder-Mulderij, Gabi Brochard, Christophe Wiggers, Rink de Vries, Saskia Krijnen, Wim P. Grzegorczyk, Marco A. Modeling dragonfly population data with a Bayesian bivariate geometric mixed-effects model |
title | Modeling dragonfly population data with a Bayesian bivariate geometric mixed-effects model |
title_full | Modeling dragonfly population data with a Bayesian bivariate geometric mixed-effects model |
title_fullStr | Modeling dragonfly population data with a Bayesian bivariate geometric mixed-effects model |
title_full_unstemmed | Modeling dragonfly population data with a Bayesian bivariate geometric mixed-effects model |
title_short | Modeling dragonfly population data with a Bayesian bivariate geometric mixed-effects model |
title_sort | modeling dragonfly population data with a bayesian bivariate geometric mixed-effects model |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10332241/ https://www.ncbi.nlm.nih.gov/pubmed/37434627 http://dx.doi.org/10.1080/02664763.2022.2068513 |
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