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Phenotype Algorithms to Identify Hidradenitis Suppurativa Using Real-World Data: Development and Validation Study
BACKGROUND: Hidradenitis suppurativa (HS) is a potentially debilitating, chronic, recurring inflammatory disease. Observational databases provide opportunities to study the epidemiology of HS. OBJECTIVE: This study’s objective was to develop phenotype algorithms for HS suitable for epidemiological s...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
JMIR Publications
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10334943/ https://www.ncbi.nlm.nih.gov/pubmed/37632892 http://dx.doi.org/10.2196/38783 |
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author | Hardin, Jill Murray, Gayle Swerdel, Joel |
author_facet | Hardin, Jill Murray, Gayle Swerdel, Joel |
author_sort | Hardin, Jill |
collection | PubMed |
description | BACKGROUND: Hidradenitis suppurativa (HS) is a potentially debilitating, chronic, recurring inflammatory disease. Observational databases provide opportunities to study the epidemiology of HS. OBJECTIVE: This study’s objective was to develop phenotype algorithms for HS suitable for epidemiological studies based on a network of observational databases. METHODS: A data-driven approach was used to develop 4 HS algorithms. A literature search identified prior HS algorithms. Standardized databases from the Observational Medical Outcomes Partnership (n=9) were used to develop 2 incident and 2 prevalent HS phenotype algorithms. Two open-source diagnostic tools, CohortDiagnostics and PheValuator, were used to evaluate and generate phenotype performance metric estimates, including sensitivity, specificity, positive predictive value (PPV), and negative predictive value. RESULTS: We developed 2 prevalent and 2 incident HS algorithms. Validation showed that PPV estimates were highest (mean 86%) for the prevalent HS algorithm requiring at least two HS diagnosis codes. Sensitivity estimates were highest (mean 58%) for the prevalent HS algorithm requiring at least one HS code. CONCLUSIONS: This study illustrates the evaluation process and provides performance metrics for 2 incident and 2 prevalent HS algorithms across 9 observational databases. The use of a rigorous data-driven approach applied to a large number of databases provides confidence that the HS algorithms can correctly identify HS subjects. |
format | Online Article Text |
id | pubmed-10334943 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | JMIR Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-103349432023-07-18 Phenotype Algorithms to Identify Hidradenitis Suppurativa Using Real-World Data: Development and Validation Study Hardin, Jill Murray, Gayle Swerdel, Joel JMIR Dermatol Original Paper BACKGROUND: Hidradenitis suppurativa (HS) is a potentially debilitating, chronic, recurring inflammatory disease. Observational databases provide opportunities to study the epidemiology of HS. OBJECTIVE: This study’s objective was to develop phenotype algorithms for HS suitable for epidemiological studies based on a network of observational databases. METHODS: A data-driven approach was used to develop 4 HS algorithms. A literature search identified prior HS algorithms. Standardized databases from the Observational Medical Outcomes Partnership (n=9) were used to develop 2 incident and 2 prevalent HS phenotype algorithms. Two open-source diagnostic tools, CohortDiagnostics and PheValuator, were used to evaluate and generate phenotype performance metric estimates, including sensitivity, specificity, positive predictive value (PPV), and negative predictive value. RESULTS: We developed 2 prevalent and 2 incident HS algorithms. Validation showed that PPV estimates were highest (mean 86%) for the prevalent HS algorithm requiring at least two HS diagnosis codes. Sensitivity estimates were highest (mean 58%) for the prevalent HS algorithm requiring at least one HS code. CONCLUSIONS: This study illustrates the evaluation process and provides performance metrics for 2 incident and 2 prevalent HS algorithms across 9 observational databases. The use of a rigorous data-driven approach applied to a large number of databases provides confidence that the HS algorithms can correctly identify HS subjects. JMIR Publications 2022-11-30 /pmc/articles/PMC10334943/ /pubmed/37632892 http://dx.doi.org/10.2196/38783 Text en ©Jill Hardin, Gayle Murray, Joel Swerdel. Originally published in JMIR Dermatology (http://derma.jmir.org), 30.11.2022. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in JMIR Dermatology, is properly cited. The complete bibliographic information, a link to the original publication on http://derma.jmir.org, as well as this copyright and license information must be included. |
spellingShingle | Original Paper Hardin, Jill Murray, Gayle Swerdel, Joel Phenotype Algorithms to Identify Hidradenitis Suppurativa Using Real-World Data: Development and Validation Study |
title | Phenotype Algorithms to Identify Hidradenitis Suppurativa Using Real-World Data: Development and Validation Study |
title_full | Phenotype Algorithms to Identify Hidradenitis Suppurativa Using Real-World Data: Development and Validation Study |
title_fullStr | Phenotype Algorithms to Identify Hidradenitis Suppurativa Using Real-World Data: Development and Validation Study |
title_full_unstemmed | Phenotype Algorithms to Identify Hidradenitis Suppurativa Using Real-World Data: Development and Validation Study |
title_short | Phenotype Algorithms to Identify Hidradenitis Suppurativa Using Real-World Data: Development and Validation Study |
title_sort | phenotype algorithms to identify hidradenitis suppurativa using real-world data: development and validation study |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10334943/ https://www.ncbi.nlm.nih.gov/pubmed/37632892 http://dx.doi.org/10.2196/38783 |
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