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Potential relevance between soybean nitrogen uptake and rhizosphere prokaryotic communities under waterlogging stress
Waterlogging in soil can limit the availability of nitrogen to plants by promoting denitrification and reducing nitrogen fixation and nitrification. The root-associated microorganisms that determine nitrogen availability at the root-soil interface can be influenced by plant genotype and soil type, w...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10336055/ https://www.ncbi.nlm.nih.gov/pubmed/37433864 http://dx.doi.org/10.1038/s43705-023-00282-0 |
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author | Lian, Tengxiang Cheng, Lang Liu, Qi Yu, Taobing Cai, Zhandong Nian, Hai Hartmann, Martin |
author_facet | Lian, Tengxiang Cheng, Lang Liu, Qi Yu, Taobing Cai, Zhandong Nian, Hai Hartmann, Martin |
author_sort | Lian, Tengxiang |
collection | PubMed |
description | Waterlogging in soil can limit the availability of nitrogen to plants by promoting denitrification and reducing nitrogen fixation and nitrification. The root-associated microorganisms that determine nitrogen availability at the root-soil interface can be influenced by plant genotype and soil type, which potentially alters the nitrogen uptake capacity of plants in waterlogged soils. In a greenhouse experiment, two soybean genotypes with contrasting capacities to resist waterlogging stress were grown in Udic Argosol and Haplic Alisol soils with and without waterlogging, respectively. Using isotope labeling, high-throughput amplicon sequencing and qPCR, we show that waterlogging negatively affects soybean yield and nitrogen absorption from fertilizer, atmosphere, and soil. These effects were soil-dependent and more pronounced in the waterlogging-sensitive than tolerant genotype. The tolerant genotype harbored more ammonia oxidizers and less nitrous oxide reducers. Anaerobic, nitrogen-fixing, denitrifying and iron-reducing bacteria such as Geobacter/Geomonas, Sphingomonas, Candidatus Koribacter, and Desulfosporosinus were proportionally enriched in association with the tolerant genotype under waterlogging. These changes in the rhizosphere microbiome might ultimately help the plant to improve nitrogen uptake under waterlogged, anoxic conditions. This research contributes to a better understanding of the adaptability of soybean genotypes under waterlogging stress and might help to formulate fertilization strategies that improve nitrogen use efficiency of soybean. [Figure: see text] |
format | Online Article Text |
id | pubmed-10336055 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-103360552023-07-13 Potential relevance between soybean nitrogen uptake and rhizosphere prokaryotic communities under waterlogging stress Lian, Tengxiang Cheng, Lang Liu, Qi Yu, Taobing Cai, Zhandong Nian, Hai Hartmann, Martin ISME Commun Article Waterlogging in soil can limit the availability of nitrogen to plants by promoting denitrification and reducing nitrogen fixation and nitrification. The root-associated microorganisms that determine nitrogen availability at the root-soil interface can be influenced by plant genotype and soil type, which potentially alters the nitrogen uptake capacity of plants in waterlogged soils. In a greenhouse experiment, two soybean genotypes with contrasting capacities to resist waterlogging stress were grown in Udic Argosol and Haplic Alisol soils with and without waterlogging, respectively. Using isotope labeling, high-throughput amplicon sequencing and qPCR, we show that waterlogging negatively affects soybean yield and nitrogen absorption from fertilizer, atmosphere, and soil. These effects were soil-dependent and more pronounced in the waterlogging-sensitive than tolerant genotype. The tolerant genotype harbored more ammonia oxidizers and less nitrous oxide reducers. Anaerobic, nitrogen-fixing, denitrifying and iron-reducing bacteria such as Geobacter/Geomonas, Sphingomonas, Candidatus Koribacter, and Desulfosporosinus were proportionally enriched in association with the tolerant genotype under waterlogging. These changes in the rhizosphere microbiome might ultimately help the plant to improve nitrogen uptake under waterlogged, anoxic conditions. This research contributes to a better understanding of the adaptability of soybean genotypes under waterlogging stress and might help to formulate fertilization strategies that improve nitrogen use efficiency of soybean. [Figure: see text] Nature Publishing Group UK 2023-07-11 /pmc/articles/PMC10336055/ /pubmed/37433864 http://dx.doi.org/10.1038/s43705-023-00282-0 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Lian, Tengxiang Cheng, Lang Liu, Qi Yu, Taobing Cai, Zhandong Nian, Hai Hartmann, Martin Potential relevance between soybean nitrogen uptake and rhizosphere prokaryotic communities under waterlogging stress |
title | Potential relevance between soybean nitrogen uptake and rhizosphere prokaryotic communities under waterlogging stress |
title_full | Potential relevance between soybean nitrogen uptake and rhizosphere prokaryotic communities under waterlogging stress |
title_fullStr | Potential relevance between soybean nitrogen uptake and rhizosphere prokaryotic communities under waterlogging stress |
title_full_unstemmed | Potential relevance between soybean nitrogen uptake and rhizosphere prokaryotic communities under waterlogging stress |
title_short | Potential relevance between soybean nitrogen uptake and rhizosphere prokaryotic communities under waterlogging stress |
title_sort | potential relevance between soybean nitrogen uptake and rhizosphere prokaryotic communities under waterlogging stress |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10336055/ https://www.ncbi.nlm.nih.gov/pubmed/37433864 http://dx.doi.org/10.1038/s43705-023-00282-0 |
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