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MetaFlux: Meta-learning global carbon fluxes from sparse spatiotemporal observations
We provide a global, long-term carbon flux dataset of gross primary production and ecosystem respiration generated using meta-learning, called MetaFlux. The idea behind meta-learning stems from the need to learn efficiently given sparse data by learning how to learn broad features across tasks to be...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10336080/ https://www.ncbi.nlm.nih.gov/pubmed/37433802 http://dx.doi.org/10.1038/s41597-023-02349-y |
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author | Nathaniel, Juan Liu, Jiangong Gentine, Pierre |
author_facet | Nathaniel, Juan Liu, Jiangong Gentine, Pierre |
author_sort | Nathaniel, Juan |
collection | PubMed |
description | We provide a global, long-term carbon flux dataset of gross primary production and ecosystem respiration generated using meta-learning, called MetaFlux. The idea behind meta-learning stems from the need to learn efficiently given sparse data by learning how to learn broad features across tasks to better infer other poorly sampled ones. Using meta-trained ensemble of deep models, we generate global carbon products on daily and monthly timescales at a 0.25-degree spatial resolution from 2001 to 2021, through a combination of reanalysis and remote-sensing products. Site-level validation finds that MetaFlux ensembles have lower validation error by 5–7% compared to their non-meta-trained counterparts. In addition, they are more robust to extreme observations, with 4–24% lower errors. We also checked for seasonality, interannual variability, and correlation to solar-induced fluorescence of the upscaled product and found that MetaFlux outperformed other machine-learning based carbon product, especially in the tropics and semi-arids by 10–40%. Overall, MetaFlux can be used to study a wide range of biogeochemical processes. |
format | Online Article Text |
id | pubmed-10336080 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-103360802023-07-13 MetaFlux: Meta-learning global carbon fluxes from sparse spatiotemporal observations Nathaniel, Juan Liu, Jiangong Gentine, Pierre Sci Data Data Descriptor We provide a global, long-term carbon flux dataset of gross primary production and ecosystem respiration generated using meta-learning, called MetaFlux. The idea behind meta-learning stems from the need to learn efficiently given sparse data by learning how to learn broad features across tasks to better infer other poorly sampled ones. Using meta-trained ensemble of deep models, we generate global carbon products on daily and monthly timescales at a 0.25-degree spatial resolution from 2001 to 2021, through a combination of reanalysis and remote-sensing products. Site-level validation finds that MetaFlux ensembles have lower validation error by 5–7% compared to their non-meta-trained counterparts. In addition, they are more robust to extreme observations, with 4–24% lower errors. We also checked for seasonality, interannual variability, and correlation to solar-induced fluorescence of the upscaled product and found that MetaFlux outperformed other machine-learning based carbon product, especially in the tropics and semi-arids by 10–40%. Overall, MetaFlux can be used to study a wide range of biogeochemical processes. Nature Publishing Group UK 2023-07-11 /pmc/articles/PMC10336080/ /pubmed/37433802 http://dx.doi.org/10.1038/s41597-023-02349-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Nathaniel, Juan Liu, Jiangong Gentine, Pierre MetaFlux: Meta-learning global carbon fluxes from sparse spatiotemporal observations |
title | MetaFlux: Meta-learning global carbon fluxes from sparse spatiotemporal observations |
title_full | MetaFlux: Meta-learning global carbon fluxes from sparse spatiotemporal observations |
title_fullStr | MetaFlux: Meta-learning global carbon fluxes from sparse spatiotemporal observations |
title_full_unstemmed | MetaFlux: Meta-learning global carbon fluxes from sparse spatiotemporal observations |
title_short | MetaFlux: Meta-learning global carbon fluxes from sparse spatiotemporal observations |
title_sort | metaflux: meta-learning global carbon fluxes from sparse spatiotemporal observations |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10336080/ https://www.ncbi.nlm.nih.gov/pubmed/37433802 http://dx.doi.org/10.1038/s41597-023-02349-y |
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