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A novel prognostic signature for hepatocellular carcinoma based on SUMOylation-related genes

SUMOylation (SUMO modification) has been confirmed to play an essential role in the progression of various malignancies. As the value of SUMOylation-related genes (SRGs) in prognosis prediction of hepatocellular carcinoma (HCC) has not been explored, we aim to construct an HCC SRGs signature. RNA se...

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Autores principales: Wang, Jianping, Cong, Peipei, Jin, Zhipeng, Liu, Lingli, Sun, Dongxu, Zhu, Wenjing, Shi, Guangjun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10336129/
https://www.ncbi.nlm.nih.gov/pubmed/37433803
http://dx.doi.org/10.1038/s41598-023-38197-4
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author Wang, Jianping
Cong, Peipei
Jin, Zhipeng
Liu, Lingli
Sun, Dongxu
Zhu, Wenjing
Shi, Guangjun
author_facet Wang, Jianping
Cong, Peipei
Jin, Zhipeng
Liu, Lingli
Sun, Dongxu
Zhu, Wenjing
Shi, Guangjun
author_sort Wang, Jianping
collection PubMed
description SUMOylation (SUMO modification) has been confirmed to play an essential role in the progression of various malignancies. As the value of SUMOylation-related genes (SRGs) in prognosis prediction of hepatocellular carcinoma (HCC) has not been explored, we aim to construct an HCC SRGs signature. RNA sequencing was utilized to identify differentially expressed SRGs. The 87 identified genes were used in Univariate Cox regression analysis and the Least Absolute Shrinkage and Selection Operator (LASSO) analysis to build a signature. The accuracy of the model was validated by the ICGC and GEO datasets. The GSEA revealed that the risk score was associated with common cancer-related pathways. The ssGSEA showed that NK cells in the high-risk group were significantly reduced. The sensitivities of anti-cancer drugs confirmed the sensitivity of the high-risk group to sorafenib was lower. Further, our cohort showed that risk scores were correlated with advanced grade and vascular invasion (VI). Finally, the results of H&E staining and immunohistochemistry of Ki67 showed that higher-risk patients are more malignant.
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spelling pubmed-103361292023-07-13 A novel prognostic signature for hepatocellular carcinoma based on SUMOylation-related genes Wang, Jianping Cong, Peipei Jin, Zhipeng Liu, Lingli Sun, Dongxu Zhu, Wenjing Shi, Guangjun Sci Rep Article SUMOylation (SUMO modification) has been confirmed to play an essential role in the progression of various malignancies. As the value of SUMOylation-related genes (SRGs) in prognosis prediction of hepatocellular carcinoma (HCC) has not been explored, we aim to construct an HCC SRGs signature. RNA sequencing was utilized to identify differentially expressed SRGs. The 87 identified genes were used in Univariate Cox regression analysis and the Least Absolute Shrinkage and Selection Operator (LASSO) analysis to build a signature. The accuracy of the model was validated by the ICGC and GEO datasets. The GSEA revealed that the risk score was associated with common cancer-related pathways. The ssGSEA showed that NK cells in the high-risk group were significantly reduced. The sensitivities of anti-cancer drugs confirmed the sensitivity of the high-risk group to sorafenib was lower. Further, our cohort showed that risk scores were correlated with advanced grade and vascular invasion (VI). Finally, the results of H&E staining and immunohistochemistry of Ki67 showed that higher-risk patients are more malignant. Nature Publishing Group UK 2023-07-11 /pmc/articles/PMC10336129/ /pubmed/37433803 http://dx.doi.org/10.1038/s41598-023-38197-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Wang, Jianping
Cong, Peipei
Jin, Zhipeng
Liu, Lingli
Sun, Dongxu
Zhu, Wenjing
Shi, Guangjun
A novel prognostic signature for hepatocellular carcinoma based on SUMOylation-related genes
title A novel prognostic signature for hepatocellular carcinoma based on SUMOylation-related genes
title_full A novel prognostic signature for hepatocellular carcinoma based on SUMOylation-related genes
title_fullStr A novel prognostic signature for hepatocellular carcinoma based on SUMOylation-related genes
title_full_unstemmed A novel prognostic signature for hepatocellular carcinoma based on SUMOylation-related genes
title_short A novel prognostic signature for hepatocellular carcinoma based on SUMOylation-related genes
title_sort novel prognostic signature for hepatocellular carcinoma based on sumoylation-related genes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10336129/
https://www.ncbi.nlm.nih.gov/pubmed/37433803
http://dx.doi.org/10.1038/s41598-023-38197-4
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