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A novel prognostic signature for hepatocellular carcinoma based on SUMOylation-related genes
SUMOylation (SUMO modification) has been confirmed to play an essential role in the progression of various malignancies. As the value of SUMOylation-related genes (SRGs) in prognosis prediction of hepatocellular carcinoma (HCC) has not been explored, we aim to construct an HCC SRGs signature. RNA se...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10336129/ https://www.ncbi.nlm.nih.gov/pubmed/37433803 http://dx.doi.org/10.1038/s41598-023-38197-4 |
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author | Wang, Jianping Cong, Peipei Jin, Zhipeng Liu, Lingli Sun, Dongxu Zhu, Wenjing Shi, Guangjun |
author_facet | Wang, Jianping Cong, Peipei Jin, Zhipeng Liu, Lingli Sun, Dongxu Zhu, Wenjing Shi, Guangjun |
author_sort | Wang, Jianping |
collection | PubMed |
description | SUMOylation (SUMO modification) has been confirmed to play an essential role in the progression of various malignancies. As the value of SUMOylation-related genes (SRGs) in prognosis prediction of hepatocellular carcinoma (HCC) has not been explored, we aim to construct an HCC SRGs signature. RNA sequencing was utilized to identify differentially expressed SRGs. The 87 identified genes were used in Univariate Cox regression analysis and the Least Absolute Shrinkage and Selection Operator (LASSO) analysis to build a signature. The accuracy of the model was validated by the ICGC and GEO datasets. The GSEA revealed that the risk score was associated with common cancer-related pathways. The ssGSEA showed that NK cells in the high-risk group were significantly reduced. The sensitivities of anti-cancer drugs confirmed the sensitivity of the high-risk group to sorafenib was lower. Further, our cohort showed that risk scores were correlated with advanced grade and vascular invasion (VI). Finally, the results of H&E staining and immunohistochemistry of Ki67 showed that higher-risk patients are more malignant. |
format | Online Article Text |
id | pubmed-10336129 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-103361292023-07-13 A novel prognostic signature for hepatocellular carcinoma based on SUMOylation-related genes Wang, Jianping Cong, Peipei Jin, Zhipeng Liu, Lingli Sun, Dongxu Zhu, Wenjing Shi, Guangjun Sci Rep Article SUMOylation (SUMO modification) has been confirmed to play an essential role in the progression of various malignancies. As the value of SUMOylation-related genes (SRGs) in prognosis prediction of hepatocellular carcinoma (HCC) has not been explored, we aim to construct an HCC SRGs signature. RNA sequencing was utilized to identify differentially expressed SRGs. The 87 identified genes were used in Univariate Cox regression analysis and the Least Absolute Shrinkage and Selection Operator (LASSO) analysis to build a signature. The accuracy of the model was validated by the ICGC and GEO datasets. The GSEA revealed that the risk score was associated with common cancer-related pathways. The ssGSEA showed that NK cells in the high-risk group were significantly reduced. The sensitivities of anti-cancer drugs confirmed the sensitivity of the high-risk group to sorafenib was lower. Further, our cohort showed that risk scores were correlated with advanced grade and vascular invasion (VI). Finally, the results of H&E staining and immunohistochemistry of Ki67 showed that higher-risk patients are more malignant. Nature Publishing Group UK 2023-07-11 /pmc/articles/PMC10336129/ /pubmed/37433803 http://dx.doi.org/10.1038/s41598-023-38197-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Wang, Jianping Cong, Peipei Jin, Zhipeng Liu, Lingli Sun, Dongxu Zhu, Wenjing Shi, Guangjun A novel prognostic signature for hepatocellular carcinoma based on SUMOylation-related genes |
title | A novel prognostic signature for hepatocellular carcinoma based on SUMOylation-related genes |
title_full | A novel prognostic signature for hepatocellular carcinoma based on SUMOylation-related genes |
title_fullStr | A novel prognostic signature for hepatocellular carcinoma based on SUMOylation-related genes |
title_full_unstemmed | A novel prognostic signature for hepatocellular carcinoma based on SUMOylation-related genes |
title_short | A novel prognostic signature for hepatocellular carcinoma based on SUMOylation-related genes |
title_sort | novel prognostic signature for hepatocellular carcinoma based on sumoylation-related genes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10336129/ https://www.ncbi.nlm.nih.gov/pubmed/37433803 http://dx.doi.org/10.1038/s41598-023-38197-4 |
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