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DNA barcoding data release for the Phoridae (Insecta, Diptera) of the Halimun-Salak National Park (Java, Indonesia)
Launched in 2015, the large-scale initiative Indonesian Biodiversity Discovery and Information System (IndoBioSys) is a multidisciplinary German-Indonesian collaboration with the main goal of establishing a standardised framework for species discovery and all associated steps. One aspect of the proj...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Pensoft Publishers
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10336553/ https://www.ncbi.nlm.nih.gov/pubmed/37448693 http://dx.doi.org/10.3897/BDJ.11.e104942 |
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author | Chimeno, Caroline Schmidt, Stefan Hamid, Hasmiandy Narakusumo, Raden Pramesa Peggie, Djunijanti Balke, Michael Cancian de Araujo, Bruno |
author_facet | Chimeno, Caroline Schmidt, Stefan Hamid, Hasmiandy Narakusumo, Raden Pramesa Peggie, Djunijanti Balke, Michael Cancian de Araujo, Bruno |
author_sort | Chimeno, Caroline |
collection | PubMed |
description | Launched in 2015, the large-scale initiative Indonesian Biodiversity Discovery and Information System (IndoBioSys) is a multidisciplinary German-Indonesian collaboration with the main goal of establishing a standardised framework for species discovery and all associated steps. One aspect of the project includes the application of DNA barcoding for species identification and biodiversity assessments. In this framework, we conducted a large-scale assessment of the insect fauna of the Mount Halimun-Salak National Park which is one of the largest tropical rain-forest ecosystems left in West Java. In this study, we present the results of processing 5,034 specimens of Phoridae (scuttle flies) via DNA barcoding. Despite limited sequencing success, we obtained more than 500 clusters using different algorithms (RESL, ASAP, SpeciesIdentifier). Moreover, Chao statistics indicated that we drastically undersampled all trap sites, implying that the true diversity of Phoridae is, in fact, much higher. With this data release, we hope to shed some light on the hidden diversity of this megadiverse group of flies. |
format | Online Article Text |
id | pubmed-10336553 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Pensoft Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-103365532023-07-13 DNA barcoding data release for the Phoridae (Insecta, Diptera) of the Halimun-Salak National Park (Java, Indonesia) Chimeno, Caroline Schmidt, Stefan Hamid, Hasmiandy Narakusumo, Raden Pramesa Peggie, Djunijanti Balke, Michael Cancian de Araujo, Bruno Biodivers Data J Research Article Launched in 2015, the large-scale initiative Indonesian Biodiversity Discovery and Information System (IndoBioSys) is a multidisciplinary German-Indonesian collaboration with the main goal of establishing a standardised framework for species discovery and all associated steps. One aspect of the project includes the application of DNA barcoding for species identification and biodiversity assessments. In this framework, we conducted a large-scale assessment of the insect fauna of the Mount Halimun-Salak National Park which is one of the largest tropical rain-forest ecosystems left in West Java. In this study, we present the results of processing 5,034 specimens of Phoridae (scuttle flies) via DNA barcoding. Despite limited sequencing success, we obtained more than 500 clusters using different algorithms (RESL, ASAP, SpeciesIdentifier). Moreover, Chao statistics indicated that we drastically undersampled all trap sites, implying that the true diversity of Phoridae is, in fact, much higher. With this data release, we hope to shed some light on the hidden diversity of this megadiverse group of flies. Pensoft Publishers 2023-07-04 /pmc/articles/PMC10336553/ /pubmed/37448693 http://dx.doi.org/10.3897/BDJ.11.e104942 Text en Caroline Chimeno, Stefan Schmidt, Hasmiandy Hamid, Raden Pramesa Narakusumo, Djunijanti Peggie, Michael Balke, Bruno Cancian de Araujo https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Chimeno, Caroline Schmidt, Stefan Hamid, Hasmiandy Narakusumo, Raden Pramesa Peggie, Djunijanti Balke, Michael Cancian de Araujo, Bruno DNA barcoding data release for the Phoridae (Insecta, Diptera) of the Halimun-Salak National Park (Java, Indonesia) |
title | DNA barcoding data release for the Phoridae (Insecta, Diptera) of the Halimun-Salak National Park (Java, Indonesia) |
title_full | DNA barcoding data release for the Phoridae (Insecta, Diptera) of the Halimun-Salak National Park (Java, Indonesia) |
title_fullStr | DNA barcoding data release for the Phoridae (Insecta, Diptera) of the Halimun-Salak National Park (Java, Indonesia) |
title_full_unstemmed | DNA barcoding data release for the Phoridae (Insecta, Diptera) of the Halimun-Salak National Park (Java, Indonesia) |
title_short | DNA barcoding data release for the Phoridae (Insecta, Diptera) of the Halimun-Salak National Park (Java, Indonesia) |
title_sort | dna barcoding data release for the phoridae (insecta, diptera) of the halimun-salak national park (java, indonesia) |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10336553/ https://www.ncbi.nlm.nih.gov/pubmed/37448693 http://dx.doi.org/10.3897/BDJ.11.e104942 |
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