Cargando…
Value-of-Information Analysis for External Validation of Risk Prediction Models
BACKGROUND: A previously developed risk prediction model needs to be validated before being used in a new population. The finite size of the validation sample entails that there is uncertainty around model performance. We apply value-of-information (VoI) methodology to quantify the consequence of un...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
SAGE Publications
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10336716/ https://www.ncbi.nlm.nih.gov/pubmed/37345680 http://dx.doi.org/10.1177/0272989X231178317 |
_version_ | 1785071267881156608 |
---|---|
author | Sadatsafavi, Mohsen Lee, Tae Yoon Wynants, Laure Vickers, Andrew J Gustafson, Paul |
author_facet | Sadatsafavi, Mohsen Lee, Tae Yoon Wynants, Laure Vickers, Andrew J Gustafson, Paul |
author_sort | Sadatsafavi, Mohsen |
collection | PubMed |
description | BACKGROUND: A previously developed risk prediction model needs to be validated before being used in a new population. The finite size of the validation sample entails that there is uncertainty around model performance. We apply value-of-information (VoI) methodology to quantify the consequence of uncertainty in terms of net benefit (NB). METHODS: We define the expected value of perfect information (EVPI) for model validation as the expected loss in NB due to not confidently knowing which of the alternative decisions confers the highest NB. We propose bootstrap-based and asymptotic methods for EVPI computations and conduct simulation studies to compare their performance. In a case study, we use the non-US subsets of a clinical trial as the development sample for predicting mortality after myocardial infarction and calculate the validation EVPI for the US subsample. RESULTS: The computation methods generated similar EVPI values in simulation studies. EVPI generally declined with larger samples. In the case study, at the prespecified threshold of 0.02, the best decision with current information would be to use the model, with an incremental NB of 0.0020 over treating all. At this threshold, the EVPI was 0.0005 (relative EVPI = 25%). When scaled to the annual number of heart attacks in the US, the expected NB loss due to uncertainty was equal to 400 true positives or 19,600 false positives, indicating the value of further model validation. CONCLUSION: VoI methods can be applied to the NB calculated during external validation of clinical prediction models. While uncertainty does not directly affect the clinical implications of NB findings, validation EVPI provides an objective perspective to the need for further validation and can be reported alongside NB in external validation studies. HIGHLIGHTS: External validation is a critical step when transporting a risk prediction model to a new setting, but the finite size of the validation sample creates uncertainty about the performance of the model. In decision theory, such uncertainty is associated with loss of net benefit because it can prevent one from identifying whether the use of the model is beneficial over alternative strategies. We define the expected value of perfect information for external validation as the expected loss in net benefit by not confidently knowing if the use of the model is net beneficial. The adoption of a model for a new population should be based on its expected net benefit; independently, value-of-information methods can be used to decide whether further validation studies are warranted. |
format | Online Article Text |
id | pubmed-10336716 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | SAGE Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-103367162023-07-13 Value-of-Information Analysis for External Validation of Risk Prediction Models Sadatsafavi, Mohsen Lee, Tae Yoon Wynants, Laure Vickers, Andrew J Gustafson, Paul Med Decis Making Original Research Articles BACKGROUND: A previously developed risk prediction model needs to be validated before being used in a new population. The finite size of the validation sample entails that there is uncertainty around model performance. We apply value-of-information (VoI) methodology to quantify the consequence of uncertainty in terms of net benefit (NB). METHODS: We define the expected value of perfect information (EVPI) for model validation as the expected loss in NB due to not confidently knowing which of the alternative decisions confers the highest NB. We propose bootstrap-based and asymptotic methods for EVPI computations and conduct simulation studies to compare their performance. In a case study, we use the non-US subsets of a clinical trial as the development sample for predicting mortality after myocardial infarction and calculate the validation EVPI for the US subsample. RESULTS: The computation methods generated similar EVPI values in simulation studies. EVPI generally declined with larger samples. In the case study, at the prespecified threshold of 0.02, the best decision with current information would be to use the model, with an incremental NB of 0.0020 over treating all. At this threshold, the EVPI was 0.0005 (relative EVPI = 25%). When scaled to the annual number of heart attacks in the US, the expected NB loss due to uncertainty was equal to 400 true positives or 19,600 false positives, indicating the value of further model validation. CONCLUSION: VoI methods can be applied to the NB calculated during external validation of clinical prediction models. While uncertainty does not directly affect the clinical implications of NB findings, validation EVPI provides an objective perspective to the need for further validation and can be reported alongside NB in external validation studies. HIGHLIGHTS: External validation is a critical step when transporting a risk prediction model to a new setting, but the finite size of the validation sample creates uncertainty about the performance of the model. In decision theory, such uncertainty is associated with loss of net benefit because it can prevent one from identifying whether the use of the model is beneficial over alternative strategies. We define the expected value of perfect information for external validation as the expected loss in net benefit by not confidently knowing if the use of the model is net beneficial. The adoption of a model for a new population should be based on its expected net benefit; independently, value-of-information methods can be used to decide whether further validation studies are warranted. SAGE Publications 2023-06-22 2023-07 /pmc/articles/PMC10336716/ /pubmed/37345680 http://dx.doi.org/10.1177/0272989X231178317 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution 4.0 License (https://creativecommons.org/licenses/by/4.0/) which permits any use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage). |
spellingShingle | Original Research Articles Sadatsafavi, Mohsen Lee, Tae Yoon Wynants, Laure Vickers, Andrew J Gustafson, Paul Value-of-Information Analysis for External Validation of Risk Prediction Models |
title | Value-of-Information Analysis for External Validation of Risk Prediction Models |
title_full | Value-of-Information Analysis for External Validation of Risk Prediction Models |
title_fullStr | Value-of-Information Analysis for External Validation of Risk Prediction Models |
title_full_unstemmed | Value-of-Information Analysis for External Validation of Risk Prediction Models |
title_short | Value-of-Information Analysis for External Validation of Risk Prediction Models |
title_sort | value-of-information analysis for external validation of risk prediction models |
topic | Original Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10336716/ https://www.ncbi.nlm.nih.gov/pubmed/37345680 http://dx.doi.org/10.1177/0272989X231178317 |
work_keys_str_mv | AT sadatsafavimohsen valueofinformationanalysisforexternalvalidationofriskpredictionmodels AT leetaeyoon valueofinformationanalysisforexternalvalidationofriskpredictionmodels AT wynantslaure valueofinformationanalysisforexternalvalidationofriskpredictionmodels AT vickersandrewj valueofinformationanalysisforexternalvalidationofriskpredictionmodels AT gustafsonpaul valueofinformationanalysisforexternalvalidationofriskpredictionmodels |