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Germline mutations in homologous recombination repair genes among Chinese pancreatic ductal adenocarcinoma patients detected using next‐generation sequencing

BACKGROUND: Genetic testing for pancreatic ductal adenocarcinoma (PDAC) patients is in constant development. However, the status of homologous recombination repair (HRR) genes in unselected Chinese PDAC has not been fully explored. This study aims to characterize the profile of germline mutations in...

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Autores principales: Jiang, Huiqin, Huang, Fei, Chen, Xinning, Zhang, Li, Shen, Minna, Pan, Baishen, Wang, Beili, Guo, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10337280/
https://www.ncbi.nlm.nih.gov/pubmed/36978154
http://dx.doi.org/10.1002/mgg3.2170
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author Jiang, Huiqin
Huang, Fei
Chen, Xinning
Zhang, Li
Shen, Minna
Pan, Baishen
Wang, Beili
Guo, Wei
author_facet Jiang, Huiqin
Huang, Fei
Chen, Xinning
Zhang, Li
Shen, Minna
Pan, Baishen
Wang, Beili
Guo, Wei
author_sort Jiang, Huiqin
collection PubMed
description BACKGROUND: Genetic testing for pancreatic ductal adenocarcinoma (PDAC) patients is in constant development. However, the status of homologous recombination repair (HRR) genes in unselected Chinese PDAC has not been fully explored. This study aims to characterize the profile of germline mutations in HRR genes in Chinese PDAC patients. METHODS: A cohort of 256 PDAC patients were enrolled at Zhongshan Hospital Fudan University between 2019 and 2021. Germline DNA was analyzed by next‐generation sequencing using a multigene panel of the 21 HRR genes. RESULTS: The germline pathogenic (P)/likely pathogenic (LP) variant rates were 7.0% (18/256) in unselected patients with pancreatic cancer. Among them, 1.6% (4/256) were identified as harboring BRCA2 variants, and 5.5% (14/256) patients carried non‐BRCA variants. Variants were detected in eight non‐BRCA genes, including ATM (4, 1.6%), PALB2 (4, 1.6%), ATR (1, 0.4%), BRIP1 (1, 0.4%), CHEK2 (1, 0.4%), MRE11 (1, 0.4%), PTEN (1, 0.4%), and STK11 (1, 0.4%). ATM, BRCA2, and PALB2 were the most prevalent variant genes. If only BRCA1/2 was tested, 5.5% of P/LP variants would have been lost. Further, we found that the landscape of P/LP HRR variants in various population cohorts was quite different. However, no significant difference was found in clinical characteristics between germline HRR P/LP carriers and non‐carriers. In our study, one case carrying a germline PALB2 variant showed a long‐time response to platinum‐based chemotherapy and PARP inhibitor. CONCLUSION: This study comprehensively depicts the prevalence and characteristics of germline HRR mutations in unselected Chinese PDAC patients. Our findings show the clinical utility of a multigene panel may increase the detection of P/LP HRR carriers.
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spelling pubmed-103372802023-07-13 Germline mutations in homologous recombination repair genes among Chinese pancreatic ductal adenocarcinoma patients detected using next‐generation sequencing Jiang, Huiqin Huang, Fei Chen, Xinning Zhang, Li Shen, Minna Pan, Baishen Wang, Beili Guo, Wei Mol Genet Genomic Med Original Articles BACKGROUND: Genetic testing for pancreatic ductal adenocarcinoma (PDAC) patients is in constant development. However, the status of homologous recombination repair (HRR) genes in unselected Chinese PDAC has not been fully explored. This study aims to characterize the profile of germline mutations in HRR genes in Chinese PDAC patients. METHODS: A cohort of 256 PDAC patients were enrolled at Zhongshan Hospital Fudan University between 2019 and 2021. Germline DNA was analyzed by next‐generation sequencing using a multigene panel of the 21 HRR genes. RESULTS: The germline pathogenic (P)/likely pathogenic (LP) variant rates were 7.0% (18/256) in unselected patients with pancreatic cancer. Among them, 1.6% (4/256) were identified as harboring BRCA2 variants, and 5.5% (14/256) patients carried non‐BRCA variants. Variants were detected in eight non‐BRCA genes, including ATM (4, 1.6%), PALB2 (4, 1.6%), ATR (1, 0.4%), BRIP1 (1, 0.4%), CHEK2 (1, 0.4%), MRE11 (1, 0.4%), PTEN (1, 0.4%), and STK11 (1, 0.4%). ATM, BRCA2, and PALB2 were the most prevalent variant genes. If only BRCA1/2 was tested, 5.5% of P/LP variants would have been lost. Further, we found that the landscape of P/LP HRR variants in various population cohorts was quite different. However, no significant difference was found in clinical characteristics between germline HRR P/LP carriers and non‐carriers. In our study, one case carrying a germline PALB2 variant showed a long‐time response to platinum‐based chemotherapy and PARP inhibitor. CONCLUSION: This study comprehensively depicts the prevalence and characteristics of germline HRR mutations in unselected Chinese PDAC patients. Our findings show the clinical utility of a multigene panel may increase the detection of P/LP HRR carriers. John Wiley and Sons Inc. 2023-03-28 /pmc/articles/PMC10337280/ /pubmed/36978154 http://dx.doi.org/10.1002/mgg3.2170 Text en © 2023 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Jiang, Huiqin
Huang, Fei
Chen, Xinning
Zhang, Li
Shen, Minna
Pan, Baishen
Wang, Beili
Guo, Wei
Germline mutations in homologous recombination repair genes among Chinese pancreatic ductal adenocarcinoma patients detected using next‐generation sequencing
title Germline mutations in homologous recombination repair genes among Chinese pancreatic ductal adenocarcinoma patients detected using next‐generation sequencing
title_full Germline mutations in homologous recombination repair genes among Chinese pancreatic ductal adenocarcinoma patients detected using next‐generation sequencing
title_fullStr Germline mutations in homologous recombination repair genes among Chinese pancreatic ductal adenocarcinoma patients detected using next‐generation sequencing
title_full_unstemmed Germline mutations in homologous recombination repair genes among Chinese pancreatic ductal adenocarcinoma patients detected using next‐generation sequencing
title_short Germline mutations in homologous recombination repair genes among Chinese pancreatic ductal adenocarcinoma patients detected using next‐generation sequencing
title_sort germline mutations in homologous recombination repair genes among chinese pancreatic ductal adenocarcinoma patients detected using next‐generation sequencing
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10337280/
https://www.ncbi.nlm.nih.gov/pubmed/36978154
http://dx.doi.org/10.1002/mgg3.2170
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