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Impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with machine learning

Vibrational Circular Dichroism (VCD) spectra often differ strongly from one conformer to another, even within the same absolute configuration of a molecule. Simulated molecular VCD spectra typically require expensive quantum chemical calculations for all conformers to generate a Boltzmann averaged t...

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Autores principales: Vermeyen, Tom, Cunha, Ana, Bultinck, Patrick, Herrebout, Wouter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10338531/
https://www.ncbi.nlm.nih.gov/pubmed/37438485
http://dx.doi.org/10.1038/s42004-023-00944-z
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author Vermeyen, Tom
Cunha, Ana
Bultinck, Patrick
Herrebout, Wouter
author_facet Vermeyen, Tom
Cunha, Ana
Bultinck, Patrick
Herrebout, Wouter
author_sort Vermeyen, Tom
collection PubMed
description Vibrational Circular Dichroism (VCD) spectra often differ strongly from one conformer to another, even within the same absolute configuration of a molecule. Simulated molecular VCD spectra typically require expensive quantum chemical calculations for all conformers to generate a Boltzmann averaged total spectrum. This paper reports whether machine learning (ML) can partly replace these quantum chemical calculations by capturing the intricate connection between a conformer geometry and its VCD spectrum. Three hypotheses concerning the added value of ML are tested. First, it is shown that for a single stereoisomer, ML can predict the VCD spectrum of a conformer from solely the conformer geometry. Second, it is found that the ML approach results in important time savings. Third, the ML model produced is unfortunately hardly transferable from one stereoisomer to another.
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spelling pubmed-103385312023-07-14 Impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with machine learning Vermeyen, Tom Cunha, Ana Bultinck, Patrick Herrebout, Wouter Commun Chem Article Vibrational Circular Dichroism (VCD) spectra often differ strongly from one conformer to another, even within the same absolute configuration of a molecule. Simulated molecular VCD spectra typically require expensive quantum chemical calculations for all conformers to generate a Boltzmann averaged total spectrum. This paper reports whether machine learning (ML) can partly replace these quantum chemical calculations by capturing the intricate connection between a conformer geometry and its VCD spectrum. Three hypotheses concerning the added value of ML are tested. First, it is shown that for a single stereoisomer, ML can predict the VCD spectrum of a conformer from solely the conformer geometry. Second, it is found that the ML approach results in important time savings. Third, the ML model produced is unfortunately hardly transferable from one stereoisomer to another. Nature Publishing Group UK 2023-07-12 /pmc/articles/PMC10338531/ /pubmed/37438485 http://dx.doi.org/10.1038/s42004-023-00944-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Vermeyen, Tom
Cunha, Ana
Bultinck, Patrick
Herrebout, Wouter
Impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with machine learning
title Impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with machine learning
title_full Impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with machine learning
title_fullStr Impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with machine learning
title_full_unstemmed Impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with machine learning
title_short Impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with machine learning
title_sort impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with machine learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10338531/
https://www.ncbi.nlm.nih.gov/pubmed/37438485
http://dx.doi.org/10.1038/s42004-023-00944-z
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