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Impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with machine learning
Vibrational Circular Dichroism (VCD) spectra often differ strongly from one conformer to another, even within the same absolute configuration of a molecule. Simulated molecular VCD spectra typically require expensive quantum chemical calculations for all conformers to generate a Boltzmann averaged t...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10338531/ https://www.ncbi.nlm.nih.gov/pubmed/37438485 http://dx.doi.org/10.1038/s42004-023-00944-z |
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author | Vermeyen, Tom Cunha, Ana Bultinck, Patrick Herrebout, Wouter |
author_facet | Vermeyen, Tom Cunha, Ana Bultinck, Patrick Herrebout, Wouter |
author_sort | Vermeyen, Tom |
collection | PubMed |
description | Vibrational Circular Dichroism (VCD) spectra often differ strongly from one conformer to another, even within the same absolute configuration of a molecule. Simulated molecular VCD spectra typically require expensive quantum chemical calculations for all conformers to generate a Boltzmann averaged total spectrum. This paper reports whether machine learning (ML) can partly replace these quantum chemical calculations by capturing the intricate connection between a conformer geometry and its VCD spectrum. Three hypotheses concerning the added value of ML are tested. First, it is shown that for a single stereoisomer, ML can predict the VCD spectrum of a conformer from solely the conformer geometry. Second, it is found that the ML approach results in important time savings. Third, the ML model produced is unfortunately hardly transferable from one stereoisomer to another. |
format | Online Article Text |
id | pubmed-10338531 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-103385312023-07-14 Impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with machine learning Vermeyen, Tom Cunha, Ana Bultinck, Patrick Herrebout, Wouter Commun Chem Article Vibrational Circular Dichroism (VCD) spectra often differ strongly from one conformer to another, even within the same absolute configuration of a molecule. Simulated molecular VCD spectra typically require expensive quantum chemical calculations for all conformers to generate a Boltzmann averaged total spectrum. This paper reports whether machine learning (ML) can partly replace these quantum chemical calculations by capturing the intricate connection between a conformer geometry and its VCD spectrum. Three hypotheses concerning the added value of ML are tested. First, it is shown that for a single stereoisomer, ML can predict the VCD spectrum of a conformer from solely the conformer geometry. Second, it is found that the ML approach results in important time savings. Third, the ML model produced is unfortunately hardly transferable from one stereoisomer to another. Nature Publishing Group UK 2023-07-12 /pmc/articles/PMC10338531/ /pubmed/37438485 http://dx.doi.org/10.1038/s42004-023-00944-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Vermeyen, Tom Cunha, Ana Bultinck, Patrick Herrebout, Wouter Impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with machine learning |
title | Impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with machine learning |
title_full | Impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with machine learning |
title_fullStr | Impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with machine learning |
title_full_unstemmed | Impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with machine learning |
title_short | Impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with machine learning |
title_sort | impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with machine learning |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10338531/ https://www.ncbi.nlm.nih.gov/pubmed/37438485 http://dx.doi.org/10.1038/s42004-023-00944-z |
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