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Individual tree segmentation of airborne and UAV LiDAR point clouds based on the watershed and optimized connection center evolution clustering

Light detection and ranging (LiDAR) data can provide 3D structural information of objects and are ideal for extracting individual tree parameters, and individual tree segmentation (ITS) is a vital step for this purpose. Various ITS methods have been emerging from airborne LiDAR scanning (ALS) or unm...

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Autores principales: Li, Yi, Xie, Donghui, Wang, Yingjie, Jin, Shuangna, Zhou, Kun, Zhang, Zhixiang, Li, Weihua, Zhang, Wuming, Mu, Xihan, Yan, Guangjian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10338759/
https://www.ncbi.nlm.nih.gov/pubmed/37456074
http://dx.doi.org/10.1002/ece3.10297
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author Li, Yi
Xie, Donghui
Wang, Yingjie
Jin, Shuangna
Zhou, Kun
Zhang, Zhixiang
Li, Weihua
Zhang, Wuming
Mu, Xihan
Yan, Guangjian
author_facet Li, Yi
Xie, Donghui
Wang, Yingjie
Jin, Shuangna
Zhou, Kun
Zhang, Zhixiang
Li, Weihua
Zhang, Wuming
Mu, Xihan
Yan, Guangjian
author_sort Li, Yi
collection PubMed
description Light detection and ranging (LiDAR) data can provide 3D structural information of objects and are ideal for extracting individual tree parameters, and individual tree segmentation (ITS) is a vital step for this purpose. Various ITS methods have been emerging from airborne LiDAR scanning (ALS) or unmanned aerial vehicle LiDAR scanning (ULS) data. Here, we propose a new individual tree segmentation method, which couples the classical and efficient watershed algorithm (WS) and the newly developed connection center evolution (CCE) clustering algorithm in pattern recognition. The CCE is first used in ITS and comprehensively optimized by considering tree structure and point cloud characteristics. Firstly, the amount of data is greatly reduced by mean shift voxelization. Then, the optimal clustering scale is automatically determined by the shapes in the projection of three different directions. We select five forest plots in Saihanba, China and 14 public plots in Alpine region, Europe with ULS or ALS point cloud densities from 11 to 3295 pts/m(2). Eleven ITS methods were used for comparison. The accuracy of tree top detection and tree height extraction is estimated by five and two metrics, respectively. The results show that the matching rate (R (match)) of tree tops is up to 0.92, the coefficient of determination (R (2)) of tree height estimation is up to .94, and the minimum root mean square error (RMSE) is 0.6 m. Our method outperforms the other methods especially in the broadleaf forests plot on slopes, where the five evaluation metrics for tree top detection outperformed the other algorithms by at least 11% on average. Our ITS method is both robust and efficient and has the potential to be used especially in coniferous forests to extract the structural parameters of individual trees for forest management, carbon stock estimation, and habitat mapping.
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spelling pubmed-103387592023-07-14 Individual tree segmentation of airborne and UAV LiDAR point clouds based on the watershed and optimized connection center evolution clustering Li, Yi Xie, Donghui Wang, Yingjie Jin, Shuangna Zhou, Kun Zhang, Zhixiang Li, Weihua Zhang, Wuming Mu, Xihan Yan, Guangjian Ecol Evol Research Articles Light detection and ranging (LiDAR) data can provide 3D structural information of objects and are ideal for extracting individual tree parameters, and individual tree segmentation (ITS) is a vital step for this purpose. Various ITS methods have been emerging from airborne LiDAR scanning (ALS) or unmanned aerial vehicle LiDAR scanning (ULS) data. Here, we propose a new individual tree segmentation method, which couples the classical and efficient watershed algorithm (WS) and the newly developed connection center evolution (CCE) clustering algorithm in pattern recognition. The CCE is first used in ITS and comprehensively optimized by considering tree structure and point cloud characteristics. Firstly, the amount of data is greatly reduced by mean shift voxelization. Then, the optimal clustering scale is automatically determined by the shapes in the projection of three different directions. We select five forest plots in Saihanba, China and 14 public plots in Alpine region, Europe with ULS or ALS point cloud densities from 11 to 3295 pts/m(2). Eleven ITS methods were used for comparison. The accuracy of tree top detection and tree height extraction is estimated by five and two metrics, respectively. The results show that the matching rate (R (match)) of tree tops is up to 0.92, the coefficient of determination (R (2)) of tree height estimation is up to .94, and the minimum root mean square error (RMSE) is 0.6 m. Our method outperforms the other methods especially in the broadleaf forests plot on slopes, where the five evaluation metrics for tree top detection outperformed the other algorithms by at least 11% on average. Our ITS method is both robust and efficient and has the potential to be used especially in coniferous forests to extract the structural parameters of individual trees for forest management, carbon stock estimation, and habitat mapping. John Wiley and Sons Inc. 2023-07-12 /pmc/articles/PMC10338759/ /pubmed/37456074 http://dx.doi.org/10.1002/ece3.10297 Text en © 2023 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Li, Yi
Xie, Donghui
Wang, Yingjie
Jin, Shuangna
Zhou, Kun
Zhang, Zhixiang
Li, Weihua
Zhang, Wuming
Mu, Xihan
Yan, Guangjian
Individual tree segmentation of airborne and UAV LiDAR point clouds based on the watershed and optimized connection center evolution clustering
title Individual tree segmentation of airborne and UAV LiDAR point clouds based on the watershed and optimized connection center evolution clustering
title_full Individual tree segmentation of airborne and UAV LiDAR point clouds based on the watershed and optimized connection center evolution clustering
title_fullStr Individual tree segmentation of airborne and UAV LiDAR point clouds based on the watershed and optimized connection center evolution clustering
title_full_unstemmed Individual tree segmentation of airborne and UAV LiDAR point clouds based on the watershed and optimized connection center evolution clustering
title_short Individual tree segmentation of airborne and UAV LiDAR point clouds based on the watershed and optimized connection center evolution clustering
title_sort individual tree segmentation of airborne and uav lidar point clouds based on the watershed and optimized connection center evolution clustering
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10338759/
https://www.ncbi.nlm.nih.gov/pubmed/37456074
http://dx.doi.org/10.1002/ece3.10297
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