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TrDosePred: A deep learning dose prediction algorithm based on transformers for head and neck cancer radiotherapy
BACKGROUND: Intensity‐Modulated Radiation Therapy (IMRT) has been the standard of care for many types of tumors. However, treatment planning for IMRT is a time‐consuming and labor‐intensive process. PURPOSE: To alleviate this tedious planning process, a novel deep learning based dose prediction algo...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10338766/ https://www.ncbi.nlm.nih.gov/pubmed/36867441 http://dx.doi.org/10.1002/acm2.13942 |
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author | Hu, Chenchen Wang, Haiyun Zhang, Wenyi Xie, Yaoqin Jiao, Ling Cui, Songye |
author_facet | Hu, Chenchen Wang, Haiyun Zhang, Wenyi Xie, Yaoqin Jiao, Ling Cui, Songye |
author_sort | Hu, Chenchen |
collection | PubMed |
description | BACKGROUND: Intensity‐Modulated Radiation Therapy (IMRT) has been the standard of care for many types of tumors. However, treatment planning for IMRT is a time‐consuming and labor‐intensive process. PURPOSE: To alleviate this tedious planning process, a novel deep learning based dose prediction algorithm (TrDosePred) was developed for head and neck cancers. METHODS: The proposed TrDosePred, which generated the dose distribution from a contoured CT image, was a U‐shape network constructed with a convolutional patch embedding and several local self‐attention based transformers. Data augmentation and ensemble approach were used for further improvement. It was trained based on the dataset from Open Knowledge‐Based Planning Challenge (OpenKBP). The performance of TrDosePred was evaluated with two mean absolute error (MAE) based scores utilized by OpenKBP challenge (i.e., Dose score and DVH score) and compared to the top three approaches of the challenge. In addition, several state‐of‐the‐art methods were implemented and compared to TrDosePred. RESULTS: The TrDosePred ensemble achieved the dose score of 2.426 Gy and the DVH score of 1.592 Gy on the test dataset, ranking at 3rd and 9th respectively in the leaderboard on CodaLab as of writing. In terms of DVH metrics, on average, the relative MAE against the clinical plans was 2.25% for targets and 2.17% for organs at risk. CONCLUSIONS: A transformer‐based framework TrDosePred was developed for dose prediction. The results showed a comparable or superior performance as compared to the previous state‐of‐the‐art approaches, demonstrating the potential of transformer to boost the treatment planning procedures. |
format | Online Article Text |
id | pubmed-10338766 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-103387662023-07-14 TrDosePred: A deep learning dose prediction algorithm based on transformers for head and neck cancer radiotherapy Hu, Chenchen Wang, Haiyun Zhang, Wenyi Xie, Yaoqin Jiao, Ling Cui, Songye J Appl Clin Med Phys Radiation Oncology Physics BACKGROUND: Intensity‐Modulated Radiation Therapy (IMRT) has been the standard of care for many types of tumors. However, treatment planning for IMRT is a time‐consuming and labor‐intensive process. PURPOSE: To alleviate this tedious planning process, a novel deep learning based dose prediction algorithm (TrDosePred) was developed for head and neck cancers. METHODS: The proposed TrDosePred, which generated the dose distribution from a contoured CT image, was a U‐shape network constructed with a convolutional patch embedding and several local self‐attention based transformers. Data augmentation and ensemble approach were used for further improvement. It was trained based on the dataset from Open Knowledge‐Based Planning Challenge (OpenKBP). The performance of TrDosePred was evaluated with two mean absolute error (MAE) based scores utilized by OpenKBP challenge (i.e., Dose score and DVH score) and compared to the top three approaches of the challenge. In addition, several state‐of‐the‐art methods were implemented and compared to TrDosePred. RESULTS: The TrDosePred ensemble achieved the dose score of 2.426 Gy and the DVH score of 1.592 Gy on the test dataset, ranking at 3rd and 9th respectively in the leaderboard on CodaLab as of writing. In terms of DVH metrics, on average, the relative MAE against the clinical plans was 2.25% for targets and 2.17% for organs at risk. CONCLUSIONS: A transformer‐based framework TrDosePred was developed for dose prediction. The results showed a comparable or superior performance as compared to the previous state‐of‐the‐art approaches, demonstrating the potential of transformer to boost the treatment planning procedures. John Wiley and Sons Inc. 2023-03-03 /pmc/articles/PMC10338766/ /pubmed/36867441 http://dx.doi.org/10.1002/acm2.13942 Text en © 2023 The Authors. Journal of Applied Clinical Medical Physics published by Wiley Periodicals, LLC on behalf of The American Association of Physicists in Medicine. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Radiation Oncology Physics Hu, Chenchen Wang, Haiyun Zhang, Wenyi Xie, Yaoqin Jiao, Ling Cui, Songye TrDosePred: A deep learning dose prediction algorithm based on transformers for head and neck cancer radiotherapy |
title | TrDosePred: A deep learning dose prediction algorithm based on transformers for head and neck cancer radiotherapy |
title_full | TrDosePred: A deep learning dose prediction algorithm based on transformers for head and neck cancer radiotherapy |
title_fullStr | TrDosePred: A deep learning dose prediction algorithm based on transformers for head and neck cancer radiotherapy |
title_full_unstemmed | TrDosePred: A deep learning dose prediction algorithm based on transformers for head and neck cancer radiotherapy |
title_short | TrDosePred: A deep learning dose prediction algorithm based on transformers for head and neck cancer radiotherapy |
title_sort | trdosepred: a deep learning dose prediction algorithm based on transformers for head and neck cancer radiotherapy |
topic | Radiation Oncology Physics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10338766/ https://www.ncbi.nlm.nih.gov/pubmed/36867441 http://dx.doi.org/10.1002/acm2.13942 |
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