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TrDosePred: A deep learning dose prediction algorithm based on transformers for head and neck cancer radiotherapy

BACKGROUND: Intensity‐Modulated Radiation Therapy (IMRT) has been the standard of care for many types of tumors. However, treatment planning for IMRT is a time‐consuming and labor‐intensive process. PURPOSE: To alleviate this tedious planning process, a novel deep learning based dose prediction algo...

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Autores principales: Hu, Chenchen, Wang, Haiyun, Zhang, Wenyi, Xie, Yaoqin, Jiao, Ling, Cui, Songye
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10338766/
https://www.ncbi.nlm.nih.gov/pubmed/36867441
http://dx.doi.org/10.1002/acm2.13942
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author Hu, Chenchen
Wang, Haiyun
Zhang, Wenyi
Xie, Yaoqin
Jiao, Ling
Cui, Songye
author_facet Hu, Chenchen
Wang, Haiyun
Zhang, Wenyi
Xie, Yaoqin
Jiao, Ling
Cui, Songye
author_sort Hu, Chenchen
collection PubMed
description BACKGROUND: Intensity‐Modulated Radiation Therapy (IMRT) has been the standard of care for many types of tumors. However, treatment planning for IMRT is a time‐consuming and labor‐intensive process. PURPOSE: To alleviate this tedious planning process, a novel deep learning based dose prediction algorithm (TrDosePred) was developed for head and neck cancers. METHODS: The proposed TrDosePred, which generated the dose distribution from a contoured CT image, was a U‐shape network constructed with a convolutional patch embedding and several local self‐attention based transformers. Data augmentation and ensemble approach were used for further improvement. It was trained based on the dataset from Open Knowledge‐Based Planning Challenge (OpenKBP). The performance of TrDosePred was evaluated with two mean absolute error (MAE) based scores utilized by OpenKBP challenge (i.e., Dose score and DVH score) and compared to the top three approaches of the challenge. In addition, several state‐of‐the‐art methods were implemented and compared to TrDosePred. RESULTS: The TrDosePred ensemble achieved the dose score of 2.426 Gy and the DVH score of 1.592 Gy on the test dataset, ranking at 3rd and 9th respectively in the leaderboard on CodaLab as of writing. In terms of DVH metrics, on average, the relative MAE against the clinical plans was 2.25% for targets and 2.17% for organs at risk. CONCLUSIONS: A transformer‐based framework TrDosePred was developed for dose prediction. The results showed a comparable or superior performance as compared to the previous state‐of‐the‐art approaches, demonstrating the potential of transformer to boost the treatment planning procedures.
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spelling pubmed-103387662023-07-14 TrDosePred: A deep learning dose prediction algorithm based on transformers for head and neck cancer radiotherapy Hu, Chenchen Wang, Haiyun Zhang, Wenyi Xie, Yaoqin Jiao, Ling Cui, Songye J Appl Clin Med Phys Radiation Oncology Physics BACKGROUND: Intensity‐Modulated Radiation Therapy (IMRT) has been the standard of care for many types of tumors. However, treatment planning for IMRT is a time‐consuming and labor‐intensive process. PURPOSE: To alleviate this tedious planning process, a novel deep learning based dose prediction algorithm (TrDosePred) was developed for head and neck cancers. METHODS: The proposed TrDosePred, which generated the dose distribution from a contoured CT image, was a U‐shape network constructed with a convolutional patch embedding and several local self‐attention based transformers. Data augmentation and ensemble approach were used for further improvement. It was trained based on the dataset from Open Knowledge‐Based Planning Challenge (OpenKBP). The performance of TrDosePred was evaluated with two mean absolute error (MAE) based scores utilized by OpenKBP challenge (i.e., Dose score and DVH score) and compared to the top three approaches of the challenge. In addition, several state‐of‐the‐art methods were implemented and compared to TrDosePred. RESULTS: The TrDosePred ensemble achieved the dose score of 2.426 Gy and the DVH score of 1.592 Gy on the test dataset, ranking at 3rd and 9th respectively in the leaderboard on CodaLab as of writing. In terms of DVH metrics, on average, the relative MAE against the clinical plans was 2.25% for targets and 2.17% for organs at risk. CONCLUSIONS: A transformer‐based framework TrDosePred was developed for dose prediction. The results showed a comparable or superior performance as compared to the previous state‐of‐the‐art approaches, demonstrating the potential of transformer to boost the treatment planning procedures. John Wiley and Sons Inc. 2023-03-03 /pmc/articles/PMC10338766/ /pubmed/36867441 http://dx.doi.org/10.1002/acm2.13942 Text en © 2023 The Authors. Journal of Applied Clinical Medical Physics published by Wiley Periodicals, LLC on behalf of The American Association of Physicists in Medicine. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Radiation Oncology Physics
Hu, Chenchen
Wang, Haiyun
Zhang, Wenyi
Xie, Yaoqin
Jiao, Ling
Cui, Songye
TrDosePred: A deep learning dose prediction algorithm based on transformers for head and neck cancer radiotherapy
title TrDosePred: A deep learning dose prediction algorithm based on transformers for head and neck cancer radiotherapy
title_full TrDosePred: A deep learning dose prediction algorithm based on transformers for head and neck cancer radiotherapy
title_fullStr TrDosePred: A deep learning dose prediction algorithm based on transformers for head and neck cancer radiotherapy
title_full_unstemmed TrDosePred: A deep learning dose prediction algorithm based on transformers for head and neck cancer radiotherapy
title_short TrDosePred: A deep learning dose prediction algorithm based on transformers for head and neck cancer radiotherapy
title_sort trdosepred: a deep learning dose prediction algorithm based on transformers for head and neck cancer radiotherapy
topic Radiation Oncology Physics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10338766/
https://www.ncbi.nlm.nih.gov/pubmed/36867441
http://dx.doi.org/10.1002/acm2.13942
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