Cargando…

Strategies for consistent and automated quantification of HDL proteome using data-independent acquisition

The introduction of mass spectrometry-based proteomics has revolutionized the high-density lipoprotein (HDL) field, with the description, characterization, and implication of HDL-associated proteins in an array of pathologies. However, acquiring robust, reproducible data is still a challenge in the...

Descripción completa

Detalles Bibliográficos
Autores principales:	Souza Junior, Douglas Ricardo, Silva, Amanda Ribeiro Martins, Ronsein, Graziella Eliza
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Biochemistry and Molecular Biology 2023
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10339053/ https://www.ncbi.nlm.nih.gov/pubmed/37286042 http://dx.doi.org/10.1016/j.jlr.2023.100397

Ejemplares similares

HDL Isolated by Immunoaffinity, Ultracentrifugation, or Precipitation is Compositionally and Functionally Distinct
por: Holzer, Michael, et al.
Publicado: (2022)

HDL proteome remodeling associates with COVID-19 severity
por: Souza Junior, Douglas Ricardo, et al.
Publicado: (2021)

Proteomic analysis of HDL from inbred mouse strains implicates APOE associated with HDL in reduced cholesterol efflux capacity via the ABCA1 pathway
por: Pamir, Nathalie, et al.
Publicado: (2016)

Enrichment of apolipoprotein A-IV and apolipoprotein D in the HDL proteome is associated with HDL functions in diabetic kidney disease without dialysis
por: Santana, Monique F. M., et al.
Publicado: (2020)

Citrullination of actin-ligand and nuclear structural proteins, cytoskeleton reorganization and protein redistribution across cellular fractions are early events in ionomycin-induced NETosis
por: Reis, Lorenna Rocha, et al.
Publicado: (2023)

A single dose of Ultraviolet-A induces proteome remodeling and senescence in primary human keratinocytes
por: Valerio, Hellen Paula, et al.
Publicado: (2021)

The Isotopic Ac-IP Tag Enables Multiplexed Proteome Quantification in Data-Independent Acquisition Mode
por: Tian, Xiaobo, et al.
Publicado: (2021)

A Versatile Isobaric Tag Enables Proteome Quantification in Data-Dependent and Data-Independent Acquisition Modes
por: Tian, Xiaobo, et al.
Publicado: (2020)

Spatial proteomics reveals subcellular reorganization in human keratinocytes exposed to UVA light
por: Valerio, Hellen Paula, et al.
Publicado: (2022)

Data-Independent Acquisition for the Quantification and Identification of Metabolites in Plasma
por: van der Laan, Tom, et al.
Publicado: (2020)

Comprehensive proteomic quantification of bladder stone progression in a cystinuric mouse model using data-independent acquisitions
por: Rose, Jacob, et al.
Publicado: (2022)

Alterations of HDL’s to piHDL’s Proteome in Patients with Chronic Inflammatory Diseases, and HDL-Targeted Therapies
por: Vyletelová, Veronika, et al.
Publicado: (2022)

TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics
por: Röst, Hannes L., et al.
Publicado: (2016)

Genetic control of the mouse HDL proteome defines HDL traits, function, and heterogeneity
por: Pamir, Nathalie, et al.
Publicado: (2019)

Urinary proteome profiling for children with autism using data-independent acquisition proteomics
por: Meng, Wenshu, et al.
Publicado: (2021)

Technical advances in proteomics: new developments in data-independent acquisition
por: Hu, Alex, et al.
Publicado: (2016)

Enhanced differential expression statistics for data-independent acquisition proteomics
por: Suomi, Tomi, et al.
Publicado: (2017)

Testosterone replacement in hypogonadal men alters the HDL proteome but not HDL cholesterol efflux capacity
por: Rubinow, Katya B., et al.
Publicado: (2012)

Quantifying the HDL proteome by mass spectrometry: how many proteins truly associate with HDL?
por: Marsche, Gunther
Publicado: (2018)

Myeloperoxidase mediated HDL oxidation and HDL proteome changes do not contribute to dysfunctional HDL in Chinese subjects with coronary artery disease
por: Wang, Guisong, et al.
Publicado: (2018)

Low concentrations of medium-sized HDL particles predict incident CVD in chronic kidney disease patients
por: Shao, Baohai, et al.
Publicado: (2023)

Refined purification strategy for reliable proteomic profiling of HDL(2/3): Impact on proteomic complexity
por: Holzer, Michael, et al.
Publicado: (2016)

Quantification of Lysine Acetylation and Succinylation Stoichiometry in Proteins Using Mass Spectrometric Data-Independent Acquisitions (SWATH)
por: Meyer, Jesse G., et al.
Publicado: (2016)

HDL subclass proteomic analysis and functional implication of protein dynamic change during HDL maturation
por: Zhang, Yuling, et al.
Publicado: (2019)

MSLibrarian: Optimized Predicted Spectral Libraries for Data-Independent Acquisition Proteomics
por: Isaksson, Marc, et al.
Publicado: (2022)

Comparative Proteome Signatures of Trace Samples by Multiplexed Data-Independent Acquisition
por: Ctortecka, Claudia, et al.
Publicado: (2021)

Effect of varying computed tomography acquisition and reconstruction parameters on semi-automated clot volume quantification
por: Kaufman, Audrey E, et al.
Publicado: (2018)

Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry
por: Searle, Brian C., et al.
Publicado: (2018)

HDL Proteome and Alzheimer’s Disease: Evidence of a Link
por: Marsillach, Judit, et al.
Publicado: (2020)

The increased antioxidant action of HDL is independent of HDL cholesterol plasma levels in triple-negative breast cancer
por: Campos, Amarilis de Lima, et al.
Publicado: (2023)

Automated knowledge acquisition
por: Sestito, Sabrina, 1961-
Publicado: (1994)

Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial
por: Ludwig, Christina, et al.
Publicado: (2018)

DIALib-QC an assessment tool for spectral libraries in data-independent acquisition proteomics
por: Midha, Mukul K., et al.
Publicado: (2020)

In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics
por: Yang, Yi, et al.
Publicado: (2020)

Quantitative Proteomic Analysis of the Senescence‐Associated Secretory Phenotype by Data‐Independent Acquisition
por: Neri, Francesco, et al.
Publicado: (2021)

Optimized data-independent acquisition approach for proteomic analysis at single-cell level
por: Wang, Yuefan, et al.
Publicado: (2022)

Proteome Remodeling of the Eye Lens at 50 Years Identified With Data-Independent Acquisition
por: Cantrell, Lee S., et al.
Publicado: (2022)

Data Independent Acquisition Reveals In-Depth Serum Proteome Changes in Canine Leishmaniosis
por: Martinković, Franjo, et al.
Publicado: (2023)

Reproducibility, Specificity and Accuracy of Relative Quantification Using Spectral Library-based Data-independent Acquisition
por: Barkovits, Katalin, et al.
Publicado: (2020)

Data-Independent Acquisition Enables Robust Quantification of 400 Proteins in Non-Depleted Canine Plasma
por: Ravuri, Halley Gora, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_4coalk2e1mgcj86kg7p478acv3