Cargando…

Landmark-Assisted Anatomy-Sensitive Retinal Vessel Segmentation Network

Automatic retinal vessel segmentation is important for assisting clinicians in diagnosing ophthalmic diseases. The existing deep learning methods remain constrained in instance connectivity and thin vessel detection. To this end, we propose a novel anatomy-sensitive retinal vessel segmentation frame...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Haifeng, Qiu, Yunlong, Song, Chonghui, Li, Jiale
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10341157/
https://www.ncbi.nlm.nih.gov/pubmed/37443654
http://dx.doi.org/10.3390/diagnostics13132260
_version_ 1785072195463020544
author Zhang, Haifeng
Qiu, Yunlong
Song, Chonghui
Li, Jiale
author_facet Zhang, Haifeng
Qiu, Yunlong
Song, Chonghui
Li, Jiale
author_sort Zhang, Haifeng
collection PubMed
description Automatic retinal vessel segmentation is important for assisting clinicians in diagnosing ophthalmic diseases. The existing deep learning methods remain constrained in instance connectivity and thin vessel detection. To this end, we propose a novel anatomy-sensitive retinal vessel segmentation framework to preserve instance connectivity and improve the segmentation accuracy of thin vessels. This framework uses TransUNet as its backbone and utilizes self-supervised extracted landmarks to guide network learning. TransUNet is designed to simultaneously benefit from the advantages of convolutional and multi-head attention mechanisms in extracting local features and modeling global dependencies. In particular, we introduce contrastive learning-based self-supervised extraction anatomical landmarks to guide the model to focus on learning the morphological information of retinal vessels. We evaluated the proposed method on three public datasets: DRIVE, CHASE-DB1, and STARE. Our method demonstrates promising results on the DRIVE and CHASE-DB1 datasets, outperforming state-of-the-art methods by improving the F1 scores by 0.36% and 0.31%, respectively. On the STARE dataset, our method achieves results close to the best-performing methods. Visualizations of the results highlight the potential of our method in maintaining topological continuity and identifying thin blood vessels. Furthermore, we conducted a series of ablation experiments to validate the effectiveness of each module in our model and considered the impact of image resolution on the results.
format Online
Article
Text
id pubmed-10341157
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-103411572023-07-14 Landmark-Assisted Anatomy-Sensitive Retinal Vessel Segmentation Network Zhang, Haifeng Qiu, Yunlong Song, Chonghui Li, Jiale Diagnostics (Basel) Article Automatic retinal vessel segmentation is important for assisting clinicians in diagnosing ophthalmic diseases. The existing deep learning methods remain constrained in instance connectivity and thin vessel detection. To this end, we propose a novel anatomy-sensitive retinal vessel segmentation framework to preserve instance connectivity and improve the segmentation accuracy of thin vessels. This framework uses TransUNet as its backbone and utilizes self-supervised extracted landmarks to guide network learning. TransUNet is designed to simultaneously benefit from the advantages of convolutional and multi-head attention mechanisms in extracting local features and modeling global dependencies. In particular, we introduce contrastive learning-based self-supervised extraction anatomical landmarks to guide the model to focus on learning the morphological information of retinal vessels. We evaluated the proposed method on three public datasets: DRIVE, CHASE-DB1, and STARE. Our method demonstrates promising results on the DRIVE and CHASE-DB1 datasets, outperforming state-of-the-art methods by improving the F1 scores by 0.36% and 0.31%, respectively. On the STARE dataset, our method achieves results close to the best-performing methods. Visualizations of the results highlight the potential of our method in maintaining topological continuity and identifying thin blood vessels. Furthermore, we conducted a series of ablation experiments to validate the effectiveness of each module in our model and considered the impact of image resolution on the results. MDPI 2023-07-04 /pmc/articles/PMC10341157/ /pubmed/37443654 http://dx.doi.org/10.3390/diagnostics13132260 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhang, Haifeng
Qiu, Yunlong
Song, Chonghui
Li, Jiale
Landmark-Assisted Anatomy-Sensitive Retinal Vessel Segmentation Network
title Landmark-Assisted Anatomy-Sensitive Retinal Vessel Segmentation Network
title_full Landmark-Assisted Anatomy-Sensitive Retinal Vessel Segmentation Network
title_fullStr Landmark-Assisted Anatomy-Sensitive Retinal Vessel Segmentation Network
title_full_unstemmed Landmark-Assisted Anatomy-Sensitive Retinal Vessel Segmentation Network
title_short Landmark-Assisted Anatomy-Sensitive Retinal Vessel Segmentation Network
title_sort landmark-assisted anatomy-sensitive retinal vessel segmentation network
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10341157/
https://www.ncbi.nlm.nih.gov/pubmed/37443654
http://dx.doi.org/10.3390/diagnostics13132260
work_keys_str_mv AT zhanghaifeng landmarkassistedanatomysensitiveretinalvesselsegmentationnetwork
AT qiuyunlong landmarkassistedanatomysensitiveretinalvesselsegmentationnetwork
AT songchonghui landmarkassistedanatomysensitiveretinalvesselsegmentationnetwork
AT lijiale landmarkassistedanatomysensitiveretinalvesselsegmentationnetwork