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Molecular Dynamics Study of the Effect of Charge and Glycosyl on Superoxide Anion Distribution near Lipid Membrane

To examine the effects of membrane charge, the electrolyte species and glycosyl on the distribution of negatively charged radical of superoxide anion (·O(2)(−)) around the cell membrane, different phospholipid bilayer systems containing ·O(2)(−) radicals, different electrolytes and phospholipid bila...

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Autores principales: Meng, Xuan, Liu, Huiyu, Zhao, Ning, Yang, Yajun, Zhao, Kai, Dai, Yujie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10341439/
https://www.ncbi.nlm.nih.gov/pubmed/37446103
http://dx.doi.org/10.3390/ijms241310926
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author Meng, Xuan
Liu, Huiyu
Zhao, Ning
Yang, Yajun
Zhao, Kai
Dai, Yujie
author_facet Meng, Xuan
Liu, Huiyu
Zhao, Ning
Yang, Yajun
Zhao, Kai
Dai, Yujie
author_sort Meng, Xuan
collection PubMed
description To examine the effects of membrane charge, the electrolyte species and glycosyl on the distribution of negatively charged radical of superoxide anion (·O(2)(−)) around the cell membrane, different phospholipid bilayer systems containing ·O(2)(−) radicals, different electrolytes and phospholipid bilayers were constructed through Charmm-GUI and Amber16. These systems were equilibrated with molecular dynamics by using Gromacs 5.0.2 to analyze the statistical behaviors of ·O(2)(−) near the lipid membrane under different conditions. It was found that in the presence of potassium rather than sodium, the negative charge of the phospholipid membrane is more likely to rarefy the superoxide anion distribution near the membrane surface. Further, the presence of glycosyl significantly reduced the density of ·O(2)(−) near the phospholipid bilayer by 78.3% compared with that of the neutral lipid membrane, which may have a significant contribution to reducing the lipid peroxidation from decreasing the ·O(2)(−) density near the membrane.
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spelling pubmed-103414392023-07-14 Molecular Dynamics Study of the Effect of Charge and Glycosyl on Superoxide Anion Distribution near Lipid Membrane Meng, Xuan Liu, Huiyu Zhao, Ning Yang, Yajun Zhao, Kai Dai, Yujie Int J Mol Sci Article To examine the effects of membrane charge, the electrolyte species and glycosyl on the distribution of negatively charged radical of superoxide anion (·O(2)(−)) around the cell membrane, different phospholipid bilayer systems containing ·O(2)(−) radicals, different electrolytes and phospholipid bilayers were constructed through Charmm-GUI and Amber16. These systems were equilibrated with molecular dynamics by using Gromacs 5.0.2 to analyze the statistical behaviors of ·O(2)(−) near the lipid membrane under different conditions. It was found that in the presence of potassium rather than sodium, the negative charge of the phospholipid membrane is more likely to rarefy the superoxide anion distribution near the membrane surface. Further, the presence of glycosyl significantly reduced the density of ·O(2)(−) near the phospholipid bilayer by 78.3% compared with that of the neutral lipid membrane, which may have a significant contribution to reducing the lipid peroxidation from decreasing the ·O(2)(−) density near the membrane. MDPI 2023-06-30 /pmc/articles/PMC10341439/ /pubmed/37446103 http://dx.doi.org/10.3390/ijms241310926 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Meng, Xuan
Liu, Huiyu
Zhao, Ning
Yang, Yajun
Zhao, Kai
Dai, Yujie
Molecular Dynamics Study of the Effect of Charge and Glycosyl on Superoxide Anion Distribution near Lipid Membrane
title Molecular Dynamics Study of the Effect of Charge and Glycosyl on Superoxide Anion Distribution near Lipid Membrane
title_full Molecular Dynamics Study of the Effect of Charge and Glycosyl on Superoxide Anion Distribution near Lipid Membrane
title_fullStr Molecular Dynamics Study of the Effect of Charge and Glycosyl on Superoxide Anion Distribution near Lipid Membrane
title_full_unstemmed Molecular Dynamics Study of the Effect of Charge and Glycosyl on Superoxide Anion Distribution near Lipid Membrane
title_short Molecular Dynamics Study of the Effect of Charge and Glycosyl on Superoxide Anion Distribution near Lipid Membrane
title_sort molecular dynamics study of the effect of charge and glycosyl on superoxide anion distribution near lipid membrane
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10341439/
https://www.ncbi.nlm.nih.gov/pubmed/37446103
http://dx.doi.org/10.3390/ijms241310926
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