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Genome-Wide Analysis of Exocyst Complex Subunit Exo70 Gene Family in Cucumber
Cucumber (Cucumis sativus L.) is an important vegetable worldwide, but its yield is affected by a wide range of pathogens and pests. As the major subunit of the exocyst complex, the roles of Exo70 members have been shown in Arabidopsis and rice, but their function are unknown in cucumber. Here, we i...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10342120/ https://www.ncbi.nlm.nih.gov/pubmed/37446106 http://dx.doi.org/10.3390/ijms241310929 |
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author | Liu, Liu Gu, Chaoheng Zhang, Jiahao Guo, Jingyu Zhang, Xiaolan Zhou, Zhaoyang |
author_facet | Liu, Liu Gu, Chaoheng Zhang, Jiahao Guo, Jingyu Zhang, Xiaolan Zhou, Zhaoyang |
author_sort | Liu, Liu |
collection | PubMed |
description | Cucumber (Cucumis sativus L.) is an important vegetable worldwide, but its yield is affected by a wide range of pathogens and pests. As the major subunit of the exocyst complex, the roles of Exo70 members have been shown in Arabidopsis and rice, but their function are unknown in cucumber. Here, we identified 18 CsExo70 members in cucumber, which were divided into three groups (Exo70.1–Exo70.3) and nine subgroups (Exo70A–Exo70I) based on the phylogenetic tree. Subsequently, systematical analyses were performed, including collinearity, gene structure, cis-acting elements, conserved motifs, expression patterns, and subcellular localization. Our results showed that CsExo70 genes were generally expressed in all tissues, and CsExo70C1 and CsExo70C2 were highly expressed in the stamen. Moreover, the expression levels of most CsExo70 genes were induced by Pseudomonas syringae pv. lachrymans (Psl) and Fusarium oxysporum f. sp. cucumerinum Owen (Foc), especially CsExo70E2 and CsExo70H3. In addition, these CsExo70s displayed similar location patterns with discrete and punctate signals in the cytoplasm. Together, our results indicate that CsExo70 members may be involved in plant development and resistance, and provide a reference for future in-depth studies of Exo70 genes in cucumber. |
format | Online Article Text |
id | pubmed-10342120 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-103421202023-07-14 Genome-Wide Analysis of Exocyst Complex Subunit Exo70 Gene Family in Cucumber Liu, Liu Gu, Chaoheng Zhang, Jiahao Guo, Jingyu Zhang, Xiaolan Zhou, Zhaoyang Int J Mol Sci Article Cucumber (Cucumis sativus L.) is an important vegetable worldwide, but its yield is affected by a wide range of pathogens and pests. As the major subunit of the exocyst complex, the roles of Exo70 members have been shown in Arabidopsis and rice, but their function are unknown in cucumber. Here, we identified 18 CsExo70 members in cucumber, which were divided into three groups (Exo70.1–Exo70.3) and nine subgroups (Exo70A–Exo70I) based on the phylogenetic tree. Subsequently, systematical analyses were performed, including collinearity, gene structure, cis-acting elements, conserved motifs, expression patterns, and subcellular localization. Our results showed that CsExo70 genes were generally expressed in all tissues, and CsExo70C1 and CsExo70C2 were highly expressed in the stamen. Moreover, the expression levels of most CsExo70 genes were induced by Pseudomonas syringae pv. lachrymans (Psl) and Fusarium oxysporum f. sp. cucumerinum Owen (Foc), especially CsExo70E2 and CsExo70H3. In addition, these CsExo70s displayed similar location patterns with discrete and punctate signals in the cytoplasm. Together, our results indicate that CsExo70 members may be involved in plant development and resistance, and provide a reference for future in-depth studies of Exo70 genes in cucumber. MDPI 2023-06-30 /pmc/articles/PMC10342120/ /pubmed/37446106 http://dx.doi.org/10.3390/ijms241310929 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Liu, Liu Gu, Chaoheng Zhang, Jiahao Guo, Jingyu Zhang, Xiaolan Zhou, Zhaoyang Genome-Wide Analysis of Exocyst Complex Subunit Exo70 Gene Family in Cucumber |
title | Genome-Wide Analysis of Exocyst Complex Subunit Exo70 Gene Family in Cucumber |
title_full | Genome-Wide Analysis of Exocyst Complex Subunit Exo70 Gene Family in Cucumber |
title_fullStr | Genome-Wide Analysis of Exocyst Complex Subunit Exo70 Gene Family in Cucumber |
title_full_unstemmed | Genome-Wide Analysis of Exocyst Complex Subunit Exo70 Gene Family in Cucumber |
title_short | Genome-Wide Analysis of Exocyst Complex Subunit Exo70 Gene Family in Cucumber |
title_sort | genome-wide analysis of exocyst complex subunit exo70 gene family in cucumber |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10342120/ https://www.ncbi.nlm.nih.gov/pubmed/37446106 http://dx.doi.org/10.3390/ijms241310929 |
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