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Genome-Wide Analysis of Exocyst Complex Subunit Exo70 Gene Family in Cucumber

Cucumber (Cucumis sativus L.) is an important vegetable worldwide, but its yield is affected by a wide range of pathogens and pests. As the major subunit of the exocyst complex, the roles of Exo70 members have been shown in Arabidopsis and rice, but their function are unknown in cucumber. Here, we i...

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Autores principales: Liu, Liu, Gu, Chaoheng, Zhang, Jiahao, Guo, Jingyu, Zhang, Xiaolan, Zhou, Zhaoyang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10342120/
https://www.ncbi.nlm.nih.gov/pubmed/37446106
http://dx.doi.org/10.3390/ijms241310929
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author Liu, Liu
Gu, Chaoheng
Zhang, Jiahao
Guo, Jingyu
Zhang, Xiaolan
Zhou, Zhaoyang
author_facet Liu, Liu
Gu, Chaoheng
Zhang, Jiahao
Guo, Jingyu
Zhang, Xiaolan
Zhou, Zhaoyang
author_sort Liu, Liu
collection PubMed
description Cucumber (Cucumis sativus L.) is an important vegetable worldwide, but its yield is affected by a wide range of pathogens and pests. As the major subunit of the exocyst complex, the roles of Exo70 members have been shown in Arabidopsis and rice, but their function are unknown in cucumber. Here, we identified 18 CsExo70 members in cucumber, which were divided into three groups (Exo70.1–Exo70.3) and nine subgroups (Exo70A–Exo70I) based on the phylogenetic tree. Subsequently, systematical analyses were performed, including collinearity, gene structure, cis-acting elements, conserved motifs, expression patterns, and subcellular localization. Our results showed that CsExo70 genes were generally expressed in all tissues, and CsExo70C1 and CsExo70C2 were highly expressed in the stamen. Moreover, the expression levels of most CsExo70 genes were induced by Pseudomonas syringae pv. lachrymans (Psl) and Fusarium oxysporum f. sp. cucumerinum Owen (Foc), especially CsExo70E2 and CsExo70H3. In addition, these CsExo70s displayed similar location patterns with discrete and punctate signals in the cytoplasm. Together, our results indicate that CsExo70 members may be involved in plant development and resistance, and provide a reference for future in-depth studies of Exo70 genes in cucumber.
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spelling pubmed-103421202023-07-14 Genome-Wide Analysis of Exocyst Complex Subunit Exo70 Gene Family in Cucumber Liu, Liu Gu, Chaoheng Zhang, Jiahao Guo, Jingyu Zhang, Xiaolan Zhou, Zhaoyang Int J Mol Sci Article Cucumber (Cucumis sativus L.) is an important vegetable worldwide, but its yield is affected by a wide range of pathogens and pests. As the major subunit of the exocyst complex, the roles of Exo70 members have been shown in Arabidopsis and rice, but their function are unknown in cucumber. Here, we identified 18 CsExo70 members in cucumber, which were divided into three groups (Exo70.1–Exo70.3) and nine subgroups (Exo70A–Exo70I) based on the phylogenetic tree. Subsequently, systematical analyses were performed, including collinearity, gene structure, cis-acting elements, conserved motifs, expression patterns, and subcellular localization. Our results showed that CsExo70 genes were generally expressed in all tissues, and CsExo70C1 and CsExo70C2 were highly expressed in the stamen. Moreover, the expression levels of most CsExo70 genes were induced by Pseudomonas syringae pv. lachrymans (Psl) and Fusarium oxysporum f. sp. cucumerinum Owen (Foc), especially CsExo70E2 and CsExo70H3. In addition, these CsExo70s displayed similar location patterns with discrete and punctate signals in the cytoplasm. Together, our results indicate that CsExo70 members may be involved in plant development and resistance, and provide a reference for future in-depth studies of Exo70 genes in cucumber. MDPI 2023-06-30 /pmc/articles/PMC10342120/ /pubmed/37446106 http://dx.doi.org/10.3390/ijms241310929 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Liu, Liu
Gu, Chaoheng
Zhang, Jiahao
Guo, Jingyu
Zhang, Xiaolan
Zhou, Zhaoyang
Genome-Wide Analysis of Exocyst Complex Subunit Exo70 Gene Family in Cucumber
title Genome-Wide Analysis of Exocyst Complex Subunit Exo70 Gene Family in Cucumber
title_full Genome-Wide Analysis of Exocyst Complex Subunit Exo70 Gene Family in Cucumber
title_fullStr Genome-Wide Analysis of Exocyst Complex Subunit Exo70 Gene Family in Cucumber
title_full_unstemmed Genome-Wide Analysis of Exocyst Complex Subunit Exo70 Gene Family in Cucumber
title_short Genome-Wide Analysis of Exocyst Complex Subunit Exo70 Gene Family in Cucumber
title_sort genome-wide analysis of exocyst complex subunit exo70 gene family in cucumber
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10342120/
https://www.ncbi.nlm.nih.gov/pubmed/37446106
http://dx.doi.org/10.3390/ijms241310929
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