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Genome-Wide Analysis and Identification of 1-Aminocyclopropane-1-Carboxylate Synthase (ACS) Gene Family in Wheat (Triticum aestivum L.)

Ethylene has an important role in regulating plant growth and development as well as responding to adversity stresses. The 1-aminocyclopropane-1-carboxylate synthase (ACS) is the rate-limiting enzyme for ethylene biosynthesis. However, the role of the ACS gene family in wheat has not been examined....

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Autores principales: Liu, Shuqing, Lei, Chao, Zhu, Zhanhua, Li, Mingzhen, Chen, Zhaopeng, He, Wei, Liu, Bin, Chen, Liuping, Li, Xuejun, Xie, Yanzhou
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10342151/
https://www.ncbi.nlm.nih.gov/pubmed/37446336
http://dx.doi.org/10.3390/ijms241311158
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author Liu, Shuqing
Lei, Chao
Zhu, Zhanhua
Li, Mingzhen
Chen, Zhaopeng
He, Wei
Liu, Bin
Chen, Liuping
Li, Xuejun
Xie, Yanzhou
author_facet Liu, Shuqing
Lei, Chao
Zhu, Zhanhua
Li, Mingzhen
Chen, Zhaopeng
He, Wei
Liu, Bin
Chen, Liuping
Li, Xuejun
Xie, Yanzhou
author_sort Liu, Shuqing
collection PubMed
description Ethylene has an important role in regulating plant growth and development as well as responding to adversity stresses. The 1-aminocyclopropane-1-carboxylate synthase (ACS) is the rate-limiting enzyme for ethylene biosynthesis. However, the role of the ACS gene family in wheat has not been examined. In this study, we identified 12 ACS members in wheat. According to their position on the chromosome, we named them TaACS1-TaACS12, which were divided into four subfamilies, and members of the same subfamilies had similar gene structures and protein-conserved motifs. Evolutionary analysis showed that fragment replication was the main reason for the expansion of the TaACS gene family. The spatiotemporal expression specificity showed that most of the members had the highest expression in roots, and all ACS genes contained W box elements that were related to root development, which suggested that the ACS gene family might play an important role in root development. The results of the gene expression profile analysis under stress showed that ACS members could respond to a variety of stresses. Protein interaction prediction showed that there were four types of proteins that could interact with TaACS. We also obtained the targeting relationship between TaACS family members and miRNA. These results provided valuable information for determining the function of the wheat ACS gene, especially under stress.
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spelling pubmed-103421512023-07-14 Genome-Wide Analysis and Identification of 1-Aminocyclopropane-1-Carboxylate Synthase (ACS) Gene Family in Wheat (Triticum aestivum L.) Liu, Shuqing Lei, Chao Zhu, Zhanhua Li, Mingzhen Chen, Zhaopeng He, Wei Liu, Bin Chen, Liuping Li, Xuejun Xie, Yanzhou Int J Mol Sci Article Ethylene has an important role in regulating plant growth and development as well as responding to adversity stresses. The 1-aminocyclopropane-1-carboxylate synthase (ACS) is the rate-limiting enzyme for ethylene biosynthesis. However, the role of the ACS gene family in wheat has not been examined. In this study, we identified 12 ACS members in wheat. According to their position on the chromosome, we named them TaACS1-TaACS12, which were divided into four subfamilies, and members of the same subfamilies had similar gene structures and protein-conserved motifs. Evolutionary analysis showed that fragment replication was the main reason for the expansion of the TaACS gene family. The spatiotemporal expression specificity showed that most of the members had the highest expression in roots, and all ACS genes contained W box elements that were related to root development, which suggested that the ACS gene family might play an important role in root development. The results of the gene expression profile analysis under stress showed that ACS members could respond to a variety of stresses. Protein interaction prediction showed that there were four types of proteins that could interact with TaACS. We also obtained the targeting relationship between TaACS family members and miRNA. These results provided valuable information for determining the function of the wheat ACS gene, especially under stress. MDPI 2023-07-06 /pmc/articles/PMC10342151/ /pubmed/37446336 http://dx.doi.org/10.3390/ijms241311158 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Liu, Shuqing
Lei, Chao
Zhu, Zhanhua
Li, Mingzhen
Chen, Zhaopeng
He, Wei
Liu, Bin
Chen, Liuping
Li, Xuejun
Xie, Yanzhou
Genome-Wide Analysis and Identification of 1-Aminocyclopropane-1-Carboxylate Synthase (ACS) Gene Family in Wheat (Triticum aestivum L.)
title Genome-Wide Analysis and Identification of 1-Aminocyclopropane-1-Carboxylate Synthase (ACS) Gene Family in Wheat (Triticum aestivum L.)
title_full Genome-Wide Analysis and Identification of 1-Aminocyclopropane-1-Carboxylate Synthase (ACS) Gene Family in Wheat (Triticum aestivum L.)
title_fullStr Genome-Wide Analysis and Identification of 1-Aminocyclopropane-1-Carboxylate Synthase (ACS) Gene Family in Wheat (Triticum aestivum L.)
title_full_unstemmed Genome-Wide Analysis and Identification of 1-Aminocyclopropane-1-Carboxylate Synthase (ACS) Gene Family in Wheat (Triticum aestivum L.)
title_short Genome-Wide Analysis and Identification of 1-Aminocyclopropane-1-Carboxylate Synthase (ACS) Gene Family in Wheat (Triticum aestivum L.)
title_sort genome-wide analysis and identification of 1-aminocyclopropane-1-carboxylate synthase (acs) gene family in wheat (triticum aestivum l.)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10342151/
https://www.ncbi.nlm.nih.gov/pubmed/37446336
http://dx.doi.org/10.3390/ijms241311158
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