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Ab initio study of molecular properties of l-tyrosine
CONTEXT: l-Tyrosine is a naturally occurring agent that acts as a precursor in biosynthesis of monoaminergic neurotransmitters in brain such as dopamine, adrenaline, noradrenaline, and hormones like thyroxine and triiodothyronine. While l-tyrosine in vacuo adopts the canonical aminoacid form with –N...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10344843/ https://www.ncbi.nlm.nih.gov/pubmed/37442864 http://dx.doi.org/10.1007/s00894-023-05648-8 |
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author | Boča, Roman Štofko, Juraj Imrich, Richard |
author_facet | Boča, Roman Štofko, Juraj Imrich, Richard |
author_sort | Boča, Roman |
collection | PubMed |
description | CONTEXT: l-Tyrosine is a naturally occurring agent that acts as a precursor in biosynthesis of monoaminergic neurotransmitters in brain such as dopamine, adrenaline, noradrenaline, and hormones like thyroxine and triiodothyronine. While l-tyrosine in vacuo adopts the canonical aminoacid form with –NH(2) and –COOH functional groups, from neutral solutions, is crystallizes in the zwitterionic form possessing –NH(3)(+) and –COO(−) groups. As l-tyrosine is non-innocent agent with respect to redox processes, redox ability in water expressed by the absolute oxidation and reduction potentials is investigated. The cluster analysis applied to a set of nine related neurotransmitters and trace amines confirms that l-tyrosine is mostly similar to aminoacid forms of phenylalanine, octopamine, and noradrenaline. METHODS: The energetic data at the Hartree–Fock MO-LCAO-SCF method has been conducted using def2-TZVP basis set, and improved by the many-body perturbation theory using the MP2 correction to the correlation energy. For the aminoacid form and the zwitterionic form of l-tyrosine, a set of molecular descriptors has been evaluated (ionization energy, electron affinity, molecular electronegativity, chemical hardness, electrophilicity index, dipole moment, quadrupole moment, and dipole polarizability). The solvent effect (CPCM) is very expressive to the zwitterionic form and alters the sign of the electron affinity from positive to negative values. In parallel, density-functional theory with B3LYP variant in the same basis set has been employed for full geometry optimization of the neutral and ionized forms of l-tyrosine allowing assessing the adiabatic (a) ionization/affinity processes. The complete vibrational analysis enables evaluating thermodynamic functions such as the inner energy, enthalpy, entropy, Gibbs energy, and consequently the absolute oxidation and reduction potentials. Of applied methods, the most reliable are B3LYP(a) results that account to the correlation energy and the electron and nuclear relaxation during the ionization/affinity processes. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00894-023-05648-8. |
format | Online Article Text |
id | pubmed-10344843 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-103448432023-07-15 Ab initio study of molecular properties of l-tyrosine Boča, Roman Štofko, Juraj Imrich, Richard J Mol Model Original Paper CONTEXT: l-Tyrosine is a naturally occurring agent that acts as a precursor in biosynthesis of monoaminergic neurotransmitters in brain such as dopamine, adrenaline, noradrenaline, and hormones like thyroxine and triiodothyronine. While l-tyrosine in vacuo adopts the canonical aminoacid form with –NH(2) and –COOH functional groups, from neutral solutions, is crystallizes in the zwitterionic form possessing –NH(3)(+) and –COO(−) groups. As l-tyrosine is non-innocent agent with respect to redox processes, redox ability in water expressed by the absolute oxidation and reduction potentials is investigated. The cluster analysis applied to a set of nine related neurotransmitters and trace amines confirms that l-tyrosine is mostly similar to aminoacid forms of phenylalanine, octopamine, and noradrenaline. METHODS: The energetic data at the Hartree–Fock MO-LCAO-SCF method has been conducted using def2-TZVP basis set, and improved by the many-body perturbation theory using the MP2 correction to the correlation energy. For the aminoacid form and the zwitterionic form of l-tyrosine, a set of molecular descriptors has been evaluated (ionization energy, electron affinity, molecular electronegativity, chemical hardness, electrophilicity index, dipole moment, quadrupole moment, and dipole polarizability). The solvent effect (CPCM) is very expressive to the zwitterionic form and alters the sign of the electron affinity from positive to negative values. In parallel, density-functional theory with B3LYP variant in the same basis set has been employed for full geometry optimization of the neutral and ionized forms of l-tyrosine allowing assessing the adiabatic (a) ionization/affinity processes. The complete vibrational analysis enables evaluating thermodynamic functions such as the inner energy, enthalpy, entropy, Gibbs energy, and consequently the absolute oxidation and reduction potentials. Of applied methods, the most reliable are B3LYP(a) results that account to the correlation energy and the electron and nuclear relaxation during the ionization/affinity processes. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00894-023-05648-8. Springer Berlin Heidelberg 2023-07-13 2023 /pmc/articles/PMC10344843/ /pubmed/37442864 http://dx.doi.org/10.1007/s00894-023-05648-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Paper Boča, Roman Štofko, Juraj Imrich, Richard Ab initio study of molecular properties of l-tyrosine |
title | Ab initio study of molecular properties of l-tyrosine |
title_full | Ab initio study of molecular properties of l-tyrosine |
title_fullStr | Ab initio study of molecular properties of l-tyrosine |
title_full_unstemmed | Ab initio study of molecular properties of l-tyrosine |
title_short | Ab initio study of molecular properties of l-tyrosine |
title_sort | ab initio study of molecular properties of l-tyrosine |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10344843/ https://www.ncbi.nlm.nih.gov/pubmed/37442864 http://dx.doi.org/10.1007/s00894-023-05648-8 |
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