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Extending the dynamic range of biomarker quantification through molecular equalization

Precision medicine requires highly scalable methods of multiplexed biomarker quantification that can accurately describe patient physiology. Unfortunately, contemporary molecular detection methods are generally limited to a dynamic range of sensitivity spanning just 3–4 orders of magnitude, whereas...

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Autores principales: Newman, Sharon S., Wilson, Brandon D., Mamerow, Daniel, Wollant, Benjamin C., Nyein, Hnin, Rosenberg-Hasson, Yael, Maecker, Holden T., Eisenstein, Michael, Soh, H. Tom
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10344875/
https://www.ncbi.nlm.nih.gov/pubmed/37443317
http://dx.doi.org/10.1038/s41467-023-39772-z
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author Newman, Sharon S.
Wilson, Brandon D.
Mamerow, Daniel
Wollant, Benjamin C.
Nyein, Hnin
Rosenberg-Hasson, Yael
Maecker, Holden T.
Eisenstein, Michael
Soh, H. Tom
author_facet Newman, Sharon S.
Wilson, Brandon D.
Mamerow, Daniel
Wollant, Benjamin C.
Nyein, Hnin
Rosenberg-Hasson, Yael
Maecker, Holden T.
Eisenstein, Michael
Soh, H. Tom
author_sort Newman, Sharon S.
collection PubMed
description Precision medicine requires highly scalable methods of multiplexed biomarker quantification that can accurately describe patient physiology. Unfortunately, contemporary molecular detection methods are generally limited to a dynamic range of sensitivity spanning just 3–4 orders of magnitude, whereas the actual physiological dynamic range of the human plasma proteome spans more than 10 orders of magnitude. Current methods rely on sample splitting and differential dilution to compensate for this mismatch, but such measures greatly limit the reproducibility and scalability that can be achieved—in particular, the effects of non-linear dilution can greatly confound the analysis of multiplexed assays. We describe here a two-pronged strategy for equalizing the signal generated by each analyte in a multiplexed panel, thereby enabling simultaneous quantification of targets spanning a wide range of concentrations. We apply our ‘EVROS’ strategy to a proximity ligation assay and demonstrate simultaneous quantification of four analytes present at concentrations spanning from low femtomolar to mid-nanomolar levels. In this initial demonstration, we achieve a dynamic range spanning seven orders of magnitude in a single 5 µl sample of undiluted human serum, highlighting the opportunity to achieve sensitive, accurate detection of diverse analytes in a highly multiplexed fashion.
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spelling pubmed-103448752023-07-15 Extending the dynamic range of biomarker quantification through molecular equalization Newman, Sharon S. Wilson, Brandon D. Mamerow, Daniel Wollant, Benjamin C. Nyein, Hnin Rosenberg-Hasson, Yael Maecker, Holden T. Eisenstein, Michael Soh, H. Tom Nat Commun Article Precision medicine requires highly scalable methods of multiplexed biomarker quantification that can accurately describe patient physiology. Unfortunately, contemporary molecular detection methods are generally limited to a dynamic range of sensitivity spanning just 3–4 orders of magnitude, whereas the actual physiological dynamic range of the human plasma proteome spans more than 10 orders of magnitude. Current methods rely on sample splitting and differential dilution to compensate for this mismatch, but such measures greatly limit the reproducibility and scalability that can be achieved—in particular, the effects of non-linear dilution can greatly confound the analysis of multiplexed assays. We describe here a two-pronged strategy for equalizing the signal generated by each analyte in a multiplexed panel, thereby enabling simultaneous quantification of targets spanning a wide range of concentrations. We apply our ‘EVROS’ strategy to a proximity ligation assay and demonstrate simultaneous quantification of four analytes present at concentrations spanning from low femtomolar to mid-nanomolar levels. In this initial demonstration, we achieve a dynamic range spanning seven orders of magnitude in a single 5 µl sample of undiluted human serum, highlighting the opportunity to achieve sensitive, accurate detection of diverse analytes in a highly multiplexed fashion. Nature Publishing Group UK 2023-07-13 /pmc/articles/PMC10344875/ /pubmed/37443317 http://dx.doi.org/10.1038/s41467-023-39772-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Newman, Sharon S.
Wilson, Brandon D.
Mamerow, Daniel
Wollant, Benjamin C.
Nyein, Hnin
Rosenberg-Hasson, Yael
Maecker, Holden T.
Eisenstein, Michael
Soh, H. Tom
Extending the dynamic range of biomarker quantification through molecular equalization
title Extending the dynamic range of biomarker quantification through molecular equalization
title_full Extending the dynamic range of biomarker quantification through molecular equalization
title_fullStr Extending the dynamic range of biomarker quantification through molecular equalization
title_full_unstemmed Extending the dynamic range of biomarker quantification through molecular equalization
title_short Extending the dynamic range of biomarker quantification through molecular equalization
title_sort extending the dynamic range of biomarker quantification through molecular equalization
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10344875/
https://www.ncbi.nlm.nih.gov/pubmed/37443317
http://dx.doi.org/10.1038/s41467-023-39772-z
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