Cargando…

Comparison of in silico predicted Mycobacterium tuberculosis spoligotypes and lineages from whole genome sequencing data

Bacterial strain-types in the Mycobacterium tuberculosis complex underlie tuberculosis disease, and have been associated with drug resistance, transmissibility, virulence, and host–pathogen interactions. Spoligotyping was developed as a molecular genotyping technique used to determine strain-types,...

Descripción completa

Detalles Bibliográficos
Autores principales:	Napier, Gary, Couvin, David, Refrégier, Guislaine, Guyeux, Christophe, Meehan, Conor J., Sola, Christophe, Campino, Susana, Phelan, Jody, Clark, Taane G.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10345134/ https://www.ncbi.nlm.nih.gov/pubmed/37443186 http://dx.doi.org/10.1038/s41598-023-38384-3

Ejemplares similares

Investigating the Diversity of Tuberculosis Spoligotypes with Dimensionality Reduction and Graph Theory
por: Senelle, Gaetan, et al.
Publicado: (2022)

Spoligotyping of Mycobacterium africanum, Burkina Faso
por: Gomgnimbou, Michel K., et al.
Publicado: (2012)

Unexpected diversity of CRISPR unveils some evolutionary patterns of repeated sequences in Mycobacterium tuberculosis
por: Refrégier, Guislaine, et al.
Publicado: (2020)

CRISPRbuilder-TB: “CRISPR-builder for tuberculosis”. Exhaustive reconstruction of the CRISPR locus in mycobacterium tuberculosis complex using SRA
por: Guyeux, Christophe, et al.
Publicado: (2021)

Consistency of Mycobacterium tuberculosis Complex Spoligotyping between the Membrane-Based Method and In Silico Approach
por: Genestet, Charlotte, et al.
Publicado: (2022)

Connection between two historical tuberculosis outbreak sites in Japan, Honshu, by a new ancestral Mycobacterium tuberculosis L2 sublineage
por: Guyeux, Christophe, et al.
Publicado: (2022)

Robust barcoding and identification of Mycobacterium tuberculosis lineages for epidemiological and clinical studies
por: Napier, Gary, et al.
Publicado: (2020)

Large-scale genomic analysis of Mycobacterium tuberculosis reveals extent of target and compensatory mutations linked to multi-drug resistant tuberculosis
por: Napier, Gary, et al.
Publicado: (2023)

A modified decision tree approach to improve the prediction and mutation discovery for drug resistance in Mycobacterium tuberculosis
por: Deelder, Wouter, et al.
Publicado: (2022)

Mixed infections in genotypic drug-resistant Mycobacterium tuberculosis
por: Wang, Linfeng, et al.
Publicado: (2023)

Novel methods included in SpolLineages tool for fast and precise prediction of Mycobacterium tuberculosis complex spoligotype families
por: Couvin, David, et al.
Publicado: (2020)

Whole genome sequencing reveals large deletions and other loss of function mutations in Mycobacterium tuberculosis drug resistance genes
por: Gomes, Laura C., et al.
Publicado: (2021)

Portable sequencing of Mycobacterium tuberculosis for clinical and epidemiological applications
por: Gómez-González, Paula J, et al.
Publicado: (2022)

Diversity of Mycobacterium tuberculosis in the Middle Fly District of Western Province, Papua New Guinea: microbead-based spoligotyping using DNA from Ziehl-Neelsen-stained microscopy preparations
por: Guernier-Cambert, Vanina, et al.
Publicado: (2019)

Large-scale reference-free analysis of flavivirus sequences in Aedes aegypti whole genome DNA sequencing data
por: Spadar, Anton, et al.
Publicado: (2023)

Machine Learning Predicts Accurately Mycobacterium tuberculosis Drug Resistance From Whole Genome Sequencing Data
por: Deelder, Wouter, et al.
Publicado: (2019)

Robust detection of point mutations involved in multidrug-resistant Mycobacterium tuberculosis in the presence of co-occurrent resistance markers
por: Libiseller-Egger, Julian, et al.
Publicado: (2020)

Functional genetic variation in pe/ppe genes contributes to diversity in Mycobacterium tuberculosis lineages and potential interactions with the human host
por: Gómez-González, Paula Josefina, et al.
Publicado: (2023)

An integrated in silico immuno-genetic analytical platform provides insights into COVID-19 serological and vaccine targets
por: Ward, Daniel, et al.
Publicado: (2021)

Spoligotyping and Mycobacterium tuberculosis
por: Gori, Andrea, et al.
Publicado: (2005)

TB-ML—a framework for comparing machine learning approaches to predict drug resistance of Mycobacterium tuberculosis
por: Libiseller-Egger, Julian, et al.
Publicado: (2023)

Geographical classification of malaria parasites through applying machine learning to whole genome sequence data
por: Deelder, Wouter, et al.
Publicado: (2022)

Spoligotyping and whole-genome sequencing analysis of lineage 1 strains of Mycobacterium tuberculosis in Da Nang, Vietnam
por: Hijikata, Minako, et al.
Publicado: (2017)

The use of microbead-based spoligotyping for Mycobacterium tuberculosis complex to evaluate the quality of the conventional method: Providing guidelines for Quality Assurance when working on membranes
por: Abadia, Edgar, et al.
Publicado: (2011)

A first assessment of the genetic diversity of Mycobacterium tuberculosis complex in Cambodia
por: Zhang, Jian, et al.
Publicado: (2011)

Global Distribution of Mycobacterium tuberculosis Spoligotypes
por: Filliol, Ingrid, et al.
Publicado: (2002)

Structural and Genomic Insights Into Pyrazinamide Resistance in Mycobacterium tuberculosis Underlie Differences Between Ancient and Modern Lineages
por: Tunstall, Tanushree, et al.
Publicado: (2021)

Methylation in Mycobacterium tuberculosis is lineage specific with associated mutations present globally
por: Phelan, Jody, et al.
Publicado: (2018)

SpoTyping: fast and accurate in silico Mycobacterium spoligotyping from sequence reads
por: Xia, Eryu, et al.
Publicado: (2016)

SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences
por: Coll, Francesc, et al.
Publicado: (2012)

Evaluation of spoligotyping, SNPs and customised MIRU-VNTR combination for genotyping Mycobacterium tuberculosis clinical isolates in Madagascar
por: Rasoahanitralisoa, Rondroarivelo, et al.
Publicado: (2017)

An integrated whole genome analysis of Mycobacterium tuberculosis reveals insights into relationship between its genome, transcriptome and methylome
por: Gomez-Gonzalez, Paula J., et al.
Publicado: (2019)

Mycobacterium tuberculosis Diversity Exploration: A Way to Serve the Three Main Weapons against Epidemics, Hygiene, Vaccine Development and Chemotherapy
por: Refrégier, Guislaine, et al.
Publicado: (2022)

A First Insight on the Population Structure of Mycobacterium tuberculosis Complex as Studied by Spoligotyping and MIRU-VNTRs in Santiago, Chile
por: Balcells, María Elvira, et al.
Publicado: (2015)

Feature weighted models to address lineage dependency in drug-resistance prediction from Mycobacterium tuberculosis genome sequences
por: Billows, Nina, et al.
Publicado: (2023)

Using affinity propagation for identifying subspecies among clonal organisms: lessons from M. tuberculosis
por: Borile, Claudio, et al.
Publicado: (2011)

Genomics and Machine Learning for Taxonomy Consensus: The Mycobacterium tuberculosis Complex Paradigm
por: Azé, Jérôme, et al.
Publicado: (2015)

Genetic diversity of candidate loci linked to Mycobacterium tuberculosis resistance to bedaquiline, delamanid and pretomanid
por: Gómez-González, Paula J., et al.
Publicado: (2021)

Microbead-based spoligotyping of Mycobacterium tuberculosis from Ziehl-Neelsen-stained microscopy preparations in Ethiopia
por: Molina-Moya, Barbara, et al.
Publicado: (2018)

Predominant Tuberculosis Spoligotypes, Delhi, India
por: Singh, Urvashi Balbir, et al.
Publicado: (2004)

Cannot write session to /tmp/vufind_sessions/sess_fsbgsbsf84hl6tkn51ro5o2pdu