Cargando…

Isolation, characterization and whole genome analysis of the novel genus Lederbergvirus, phage vB_EcoP_E212 infecting enterotoxigenic Escherichia coli K88

The newly discovered phage vB_EcoP_E212 (also known as E212) was characterized and its genome was annotated in this study, which was conducted in Jilin, China. Transmission electron microscopy indicates that phage E212 belongs to the class Caudoviricetes. This phage exclusively infects enterotoxigen...

Descripción completa

Detalles Bibliográficos
Autores principales: Wei, Bingdong, Cong, Cong, Zheng, Lin, Chen, Long, Yan, Xiaogang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10345575/
https://www.ncbi.nlm.nih.gov/pubmed/37105435
http://dx.doi.org/10.1016/j.virusres.2023.199125
_version_ 1785073120132988928
author Wei, Bingdong
Cong, Cong
Zheng, Lin
Chen, Long
Yan, Xiaogang
author_facet Wei, Bingdong
Cong, Cong
Zheng, Lin
Chen, Long
Yan, Xiaogang
author_sort Wei, Bingdong
collection PubMed
description The newly discovered phage vB_EcoP_E212 (also known as E212) was characterized and its genome was annotated in this study, which was conducted in Jilin, China. Transmission electron microscopy indicates that phage E212 belongs to the class Caudoviricetes. This phage exclusively infects enterotoxigenic E. coli K88. E212 was found to have a short latent period of 20 min, and a burst size of 125 PFU/cell. Additionally, E212 remained stable at all pH levels (3.0–12.0) and temperatures between -20 and 60 ºC. The genome of the phage E212 consists of 38,252 bp dsDNA molecule with a G + C content of 46.98%. The genome is projected to include 53 ORFs but no tRNAs. This phage lacks homologs of virulence factors or antimicrobial resistance genes, but it has lysogeny-related genes. Phage E212 was placed in the genus Lederbergvirus as a result of nucleotide sequence alignment and phylogenetic analysis.
format Online
Article
Text
id pubmed-10345575
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-103455752023-07-15 Isolation, characterization and whole genome analysis of the novel genus Lederbergvirus, phage vB_EcoP_E212 infecting enterotoxigenic Escherichia coli K88 Wei, Bingdong Cong, Cong Zheng, Lin Chen, Long Yan, Xiaogang Virus Res Article The newly discovered phage vB_EcoP_E212 (also known as E212) was characterized and its genome was annotated in this study, which was conducted in Jilin, China. Transmission electron microscopy indicates that phage E212 belongs to the class Caudoviricetes. This phage exclusively infects enterotoxigenic E. coli K88. E212 was found to have a short latent period of 20 min, and a burst size of 125 PFU/cell. Additionally, E212 remained stable at all pH levels (3.0–12.0) and temperatures between -20 and 60 ºC. The genome of the phage E212 consists of 38,252 bp dsDNA molecule with a G + C content of 46.98%. The genome is projected to include 53 ORFs but no tRNAs. This phage lacks homologs of virulence factors or antimicrobial resistance genes, but it has lysogeny-related genes. Phage E212 was placed in the genus Lederbergvirus as a result of nucleotide sequence alignment and phylogenetic analysis. Elsevier 2023-05-13 /pmc/articles/PMC10345575/ /pubmed/37105435 http://dx.doi.org/10.1016/j.virusres.2023.199125 Text en © 2023 Published by Elsevier B.V. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Wei, Bingdong
Cong, Cong
Zheng, Lin
Chen, Long
Yan, Xiaogang
Isolation, characterization and whole genome analysis of the novel genus Lederbergvirus, phage vB_EcoP_E212 infecting enterotoxigenic Escherichia coli K88
title Isolation, characterization and whole genome analysis of the novel genus Lederbergvirus, phage vB_EcoP_E212 infecting enterotoxigenic Escherichia coli K88
title_full Isolation, characterization and whole genome analysis of the novel genus Lederbergvirus, phage vB_EcoP_E212 infecting enterotoxigenic Escherichia coli K88
title_fullStr Isolation, characterization and whole genome analysis of the novel genus Lederbergvirus, phage vB_EcoP_E212 infecting enterotoxigenic Escherichia coli K88
title_full_unstemmed Isolation, characterization and whole genome analysis of the novel genus Lederbergvirus, phage vB_EcoP_E212 infecting enterotoxigenic Escherichia coli K88
title_short Isolation, characterization and whole genome analysis of the novel genus Lederbergvirus, phage vB_EcoP_E212 infecting enterotoxigenic Escherichia coli K88
title_sort isolation, characterization and whole genome analysis of the novel genus lederbergvirus, phage vb_ecop_e212 infecting enterotoxigenic escherichia coli k88
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10345575/
https://www.ncbi.nlm.nih.gov/pubmed/37105435
http://dx.doi.org/10.1016/j.virusres.2023.199125
work_keys_str_mv AT weibingdong isolationcharacterizationandwholegenomeanalysisofthenovelgenuslederbergvirusphagevbecope212infectingenterotoxigenicescherichiacolik88
AT congcong isolationcharacterizationandwholegenomeanalysisofthenovelgenuslederbergvirusphagevbecope212infectingenterotoxigenicescherichiacolik88
AT zhenglin isolationcharacterizationandwholegenomeanalysisofthenovelgenuslederbergvirusphagevbecope212infectingenterotoxigenicescherichiacolik88
AT chenlong isolationcharacterizationandwholegenomeanalysisofthenovelgenuslederbergvirusphagevbecope212infectingenterotoxigenicescherichiacolik88
AT yanxiaogang isolationcharacterizationandwholegenomeanalysisofthenovelgenuslederbergvirusphagevbecope212infectingenterotoxigenicescherichiacolik88