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Effectively utilizing publicly available databases for cancer target evaluation

The majority of compounds designed against cancer drug targets do not progress to become approved drugs, mainly due to lack of efficacy and/or unmanageable toxicity. Robust target evaluation is therefore required before progressing through the drug discovery process to reduce the high attrition rate...

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Detalles Bibliográficos
Autores principales: Croft, Daniel, Lodhia, Puja, Lourenco, Sofia, MacKay, Craig
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10346432/
https://www.ncbi.nlm.nih.gov/pubmed/37457379
http://dx.doi.org/10.1093/narcan/zcad035
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author Croft, Daniel
Lodhia, Puja
Lourenco, Sofia
MacKay, Craig
author_facet Croft, Daniel
Lodhia, Puja
Lourenco, Sofia
MacKay, Craig
author_sort Croft, Daniel
collection PubMed
description The majority of compounds designed against cancer drug targets do not progress to become approved drugs, mainly due to lack of efficacy and/or unmanageable toxicity. Robust target evaluation is therefore required before progressing through the drug discovery process to reduce the high attrition rate. There are a wealth of publicly available databases that can be mined to generate data as part of a target evaluation. It can, however, be challenging to learn what databases are available, how and when they should be used, and to understand the associated limitations. Here, we have compiled and present key, freely accessible and easy-to-use databases that house informative datasets from in vitro, in vivo and clinical studies. We also highlight comprehensive target review databases that aim to bring together information from multiple sources into one-stop portals. In the post-genomics era, a key objective is to exploit the extensive cell, animal and patient characterization datasets in order to deliver precision medicine on a patient-specific basis. Effective utilization of the highlighted databases will go some way towards supporting the cancer research community achieve these aims.
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spelling pubmed-103464322023-07-15 Effectively utilizing publicly available databases for cancer target evaluation Croft, Daniel Lodhia, Puja Lourenco, Sofia MacKay, Craig NAR Cancer Critical Reviews and Perspectives The majority of compounds designed against cancer drug targets do not progress to become approved drugs, mainly due to lack of efficacy and/or unmanageable toxicity. Robust target evaluation is therefore required before progressing through the drug discovery process to reduce the high attrition rate. There are a wealth of publicly available databases that can be mined to generate data as part of a target evaluation. It can, however, be challenging to learn what databases are available, how and when they should be used, and to understand the associated limitations. Here, we have compiled and present key, freely accessible and easy-to-use databases that house informative datasets from in vitro, in vivo and clinical studies. We also highlight comprehensive target review databases that aim to bring together information from multiple sources into one-stop portals. In the post-genomics era, a key objective is to exploit the extensive cell, animal and patient characterization datasets in order to deliver precision medicine on a patient-specific basis. Effective utilization of the highlighted databases will go some way towards supporting the cancer research community achieve these aims. Oxford University Press 2023-07-14 /pmc/articles/PMC10346432/ /pubmed/37457379 http://dx.doi.org/10.1093/narcan/zcad035 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of NAR Cancer. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Critical Reviews and Perspectives
Croft, Daniel
Lodhia, Puja
Lourenco, Sofia
MacKay, Craig
Effectively utilizing publicly available databases for cancer target evaluation
title Effectively utilizing publicly available databases for cancer target evaluation
title_full Effectively utilizing publicly available databases for cancer target evaluation
title_fullStr Effectively utilizing publicly available databases for cancer target evaluation
title_full_unstemmed Effectively utilizing publicly available databases for cancer target evaluation
title_short Effectively utilizing publicly available databases for cancer target evaluation
title_sort effectively utilizing publicly available databases for cancer target evaluation
topic Critical Reviews and Perspectives
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10346432/
https://www.ncbi.nlm.nih.gov/pubmed/37457379
http://dx.doi.org/10.1093/narcan/zcad035
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