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Effectively utilizing publicly available databases for cancer target evaluation
The majority of compounds designed against cancer drug targets do not progress to become approved drugs, mainly due to lack of efficacy and/or unmanageable toxicity. Robust target evaluation is therefore required before progressing through the drug discovery process to reduce the high attrition rate...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10346432/ https://www.ncbi.nlm.nih.gov/pubmed/37457379 http://dx.doi.org/10.1093/narcan/zcad035 |
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author | Croft, Daniel Lodhia, Puja Lourenco, Sofia MacKay, Craig |
author_facet | Croft, Daniel Lodhia, Puja Lourenco, Sofia MacKay, Craig |
author_sort | Croft, Daniel |
collection | PubMed |
description | The majority of compounds designed against cancer drug targets do not progress to become approved drugs, mainly due to lack of efficacy and/or unmanageable toxicity. Robust target evaluation is therefore required before progressing through the drug discovery process to reduce the high attrition rate. There are a wealth of publicly available databases that can be mined to generate data as part of a target evaluation. It can, however, be challenging to learn what databases are available, how and when they should be used, and to understand the associated limitations. Here, we have compiled and present key, freely accessible and easy-to-use databases that house informative datasets from in vitro, in vivo and clinical studies. We also highlight comprehensive target review databases that aim to bring together information from multiple sources into one-stop portals. In the post-genomics era, a key objective is to exploit the extensive cell, animal and patient characterization datasets in order to deliver precision medicine on a patient-specific basis. Effective utilization of the highlighted databases will go some way towards supporting the cancer research community achieve these aims. |
format | Online Article Text |
id | pubmed-10346432 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-103464322023-07-15 Effectively utilizing publicly available databases for cancer target evaluation Croft, Daniel Lodhia, Puja Lourenco, Sofia MacKay, Craig NAR Cancer Critical Reviews and Perspectives The majority of compounds designed against cancer drug targets do not progress to become approved drugs, mainly due to lack of efficacy and/or unmanageable toxicity. Robust target evaluation is therefore required before progressing through the drug discovery process to reduce the high attrition rate. There are a wealth of publicly available databases that can be mined to generate data as part of a target evaluation. It can, however, be challenging to learn what databases are available, how and when they should be used, and to understand the associated limitations. Here, we have compiled and present key, freely accessible and easy-to-use databases that house informative datasets from in vitro, in vivo and clinical studies. We also highlight comprehensive target review databases that aim to bring together information from multiple sources into one-stop portals. In the post-genomics era, a key objective is to exploit the extensive cell, animal and patient characterization datasets in order to deliver precision medicine on a patient-specific basis. Effective utilization of the highlighted databases will go some way towards supporting the cancer research community achieve these aims. Oxford University Press 2023-07-14 /pmc/articles/PMC10346432/ /pubmed/37457379 http://dx.doi.org/10.1093/narcan/zcad035 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of NAR Cancer. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Critical Reviews and Perspectives Croft, Daniel Lodhia, Puja Lourenco, Sofia MacKay, Craig Effectively utilizing publicly available databases for cancer target evaluation |
title | Effectively utilizing publicly available databases for cancer target evaluation |
title_full | Effectively utilizing publicly available databases for cancer target evaluation |
title_fullStr | Effectively utilizing publicly available databases for cancer target evaluation |
title_full_unstemmed | Effectively utilizing publicly available databases for cancer target evaluation |
title_short | Effectively utilizing publicly available databases for cancer target evaluation |
title_sort | effectively utilizing publicly available databases for cancer target evaluation |
topic | Critical Reviews and Perspectives |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10346432/ https://www.ncbi.nlm.nih.gov/pubmed/37457379 http://dx.doi.org/10.1093/narcan/zcad035 |
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