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An online tool for survival prediction of extrapulmonary small cell carcinoma with random forest

PURPOSE: Extrapulmonary small cell carcinoma (EPSCC) is rare, and its knowledge is mainly extrapolated from small cell lung carcinoma. Reliable survival prediction tools are lacking. METHODS: A total of 3,921 cases of EPSCC were collected from the Surveillance Epidemiology and End Results (SEER) dat...

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Autor principal: Zhang, Xin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10346459/
https://www.ncbi.nlm.nih.gov/pubmed/37456228
http://dx.doi.org/10.3389/fonc.2023.1166424
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author Zhang, Xin
author_facet Zhang, Xin
author_sort Zhang, Xin
collection PubMed
description PURPOSE: Extrapulmonary small cell carcinoma (EPSCC) is rare, and its knowledge is mainly extrapolated from small cell lung carcinoma. Reliable survival prediction tools are lacking. METHODS: A total of 3,921 cases of EPSCC were collected from the Surveillance Epidemiology and End Results (SEER) database, which form the training and internal validation cohorts of the survival prediction model. The endpoint was an overall survival of 0.5–5 years. Internal validation performances of machine learning algorithms were compared, and the best model was selected. External validation (n = 68) was performed to evaluate the generalization ability of the selected model. RESULTS: Among machine learning algorithms, the random forest model performs best on internal validation, whose area under the curve (AUC) is 0.736–0.800. The net benefit is higher than the TNM classification in decision curve analysis. The AUC of this model on the external validation cohort is 0.739–0.811. This model was then deployed online as a free, publicly available prediction tool of EPSCC (http://42.192.80.13:4399/). CONCLUSION: This study provides an excellent online survival prediction tool for EPSCC with machine learning and large-scale data. Age, TNM stages, and surgery (including potential performance status information) are the most critical factors for the prediction model.
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spelling pubmed-103464592023-07-15 An online tool for survival prediction of extrapulmonary small cell carcinoma with random forest Zhang, Xin Front Oncol Oncology PURPOSE: Extrapulmonary small cell carcinoma (EPSCC) is rare, and its knowledge is mainly extrapolated from small cell lung carcinoma. Reliable survival prediction tools are lacking. METHODS: A total of 3,921 cases of EPSCC were collected from the Surveillance Epidemiology and End Results (SEER) database, which form the training and internal validation cohorts of the survival prediction model. The endpoint was an overall survival of 0.5–5 years. Internal validation performances of machine learning algorithms were compared, and the best model was selected. External validation (n = 68) was performed to evaluate the generalization ability of the selected model. RESULTS: Among machine learning algorithms, the random forest model performs best on internal validation, whose area under the curve (AUC) is 0.736–0.800. The net benefit is higher than the TNM classification in decision curve analysis. The AUC of this model on the external validation cohort is 0.739–0.811. This model was then deployed online as a free, publicly available prediction tool of EPSCC (http://42.192.80.13:4399/). CONCLUSION: This study provides an excellent online survival prediction tool for EPSCC with machine learning and large-scale data. Age, TNM stages, and surgery (including potential performance status information) are the most critical factors for the prediction model. Frontiers Media S.A. 2023-06-29 /pmc/articles/PMC10346459/ /pubmed/37456228 http://dx.doi.org/10.3389/fonc.2023.1166424 Text en Copyright © 2023 Zhang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Zhang, Xin
An online tool for survival prediction of extrapulmonary small cell carcinoma with random forest
title An online tool for survival prediction of extrapulmonary small cell carcinoma with random forest
title_full An online tool for survival prediction of extrapulmonary small cell carcinoma with random forest
title_fullStr An online tool for survival prediction of extrapulmonary small cell carcinoma with random forest
title_full_unstemmed An online tool for survival prediction of extrapulmonary small cell carcinoma with random forest
title_short An online tool for survival prediction of extrapulmonary small cell carcinoma with random forest
title_sort online tool for survival prediction of extrapulmonary small cell carcinoma with random forest
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10346459/
https://www.ncbi.nlm.nih.gov/pubmed/37456228
http://dx.doi.org/10.3389/fonc.2023.1166424
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