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Comparative Cytogenetics and Fluorescent Chromosome Banding in Five Indian Species of Dipcadi Medik

The genus Dipcadi Medik. (Subfamily: Scilloideae) has a narrow distribution in India and several overlapping morphological traits make the genus taxonomically challenging at the species level. Cytogenetic characterization can provide additional taxonomic data and can be used to evaluate genetic dive...

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Autores principales: Samanta, Tundra, Jha, Timir B., Ray, Sudipta, Jha, Sumita
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10346625/
https://www.ncbi.nlm.nih.gov/pubmed/37447096
http://dx.doi.org/10.3390/plants12132534
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author Samanta, Tundra
Jha, Timir B.
Ray, Sudipta
Jha, Sumita
author_facet Samanta, Tundra
Jha, Timir B.
Ray, Sudipta
Jha, Sumita
author_sort Samanta, Tundra
collection PubMed
description The genus Dipcadi Medik. (Subfamily: Scilloideae) has a narrow distribution in India and several overlapping morphological traits make the genus taxonomically challenging at the species level. Cytogenetic characterization can provide additional taxonomic data and can be used to evaluate genetic diversity at the species level. We have accomplished comparative karyotype analysis and fluorescence banding patterns using 4′-6-Diamidino-2-phenylindole (DAPI) and Chromomycin A(3) (CMA) in five Indian species for the first time. The karyotypes of D. concanense and D. goaense exhibited similar fluorochrome banding profiles. However, D. montanum, D. ursulae and D. erythraeum differ distinctly in their karyotypes. In all taxa, CMA(+ve)/DAPI(−ve) or DAPI(0) (GC-rich) constitutive heterochromatin was located at the constriction region or terminal satellite of the nucleolar chromosome. DAPI(+ve)/CMA(−ve) or CMA(0) (AT-rich) heterochromatin dominates in D. montanum, D. ursulae and D. erythraeum. However, D. erythraeum shows a distinct variation in fluorochrome banding pattern from all other species. The distribution of CMA and DAPI bands is a reflection of heterochromatin composition and variations acquired by different species. This characterization can be used to assess phylogenetic relationships in the understudied genus Dipcadi and may serve as a basis for other genomic analyses and evolutionary studies.
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spelling pubmed-103466252023-07-15 Comparative Cytogenetics and Fluorescent Chromosome Banding in Five Indian Species of Dipcadi Medik Samanta, Tundra Jha, Timir B. Ray, Sudipta Jha, Sumita Plants (Basel) Article The genus Dipcadi Medik. (Subfamily: Scilloideae) has a narrow distribution in India and several overlapping morphological traits make the genus taxonomically challenging at the species level. Cytogenetic characterization can provide additional taxonomic data and can be used to evaluate genetic diversity at the species level. We have accomplished comparative karyotype analysis and fluorescence banding patterns using 4′-6-Diamidino-2-phenylindole (DAPI) and Chromomycin A(3) (CMA) in five Indian species for the first time. The karyotypes of D. concanense and D. goaense exhibited similar fluorochrome banding profiles. However, D. montanum, D. ursulae and D. erythraeum differ distinctly in their karyotypes. In all taxa, CMA(+ve)/DAPI(−ve) or DAPI(0) (GC-rich) constitutive heterochromatin was located at the constriction region or terminal satellite of the nucleolar chromosome. DAPI(+ve)/CMA(−ve) or CMA(0) (AT-rich) heterochromatin dominates in D. montanum, D. ursulae and D. erythraeum. However, D. erythraeum shows a distinct variation in fluorochrome banding pattern from all other species. The distribution of CMA and DAPI bands is a reflection of heterochromatin composition and variations acquired by different species. This characterization can be used to assess phylogenetic relationships in the understudied genus Dipcadi and may serve as a basis for other genomic analyses and evolutionary studies. MDPI 2023-07-03 /pmc/articles/PMC10346625/ /pubmed/37447096 http://dx.doi.org/10.3390/plants12132534 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Samanta, Tundra
Jha, Timir B.
Ray, Sudipta
Jha, Sumita
Comparative Cytogenetics and Fluorescent Chromosome Banding in Five Indian Species of Dipcadi Medik
title Comparative Cytogenetics and Fluorescent Chromosome Banding in Five Indian Species of Dipcadi Medik
title_full Comparative Cytogenetics and Fluorescent Chromosome Banding in Five Indian Species of Dipcadi Medik
title_fullStr Comparative Cytogenetics and Fluorescent Chromosome Banding in Five Indian Species of Dipcadi Medik
title_full_unstemmed Comparative Cytogenetics and Fluorescent Chromosome Banding in Five Indian Species of Dipcadi Medik
title_short Comparative Cytogenetics and Fluorescent Chromosome Banding in Five Indian Species of Dipcadi Medik
title_sort comparative cytogenetics and fluorescent chromosome banding in five indian species of dipcadi medik
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10346625/
https://www.ncbi.nlm.nih.gov/pubmed/37447096
http://dx.doi.org/10.3390/plants12132534
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