Cargando…

Comparative genomics of food-derived probiotic Lactiplantibacillus plantarum K25 reveals its hidden potential, compactness, and efficiency

This study aimed to investigate the intricate genetic makeup of the Lactiplantibacillus plantarum K25 strain by conducting a comprehensive analysis of comparative genomics. The results of our study demonstrate that the genome exhibits a high-level efficiency and compactness, comprising a total of 3,...

Descripción completa

Detalles Bibliográficos
Autores principales: Aziz, Tariq, Naveed, Muhammad, Shabbir, Muhammad Aqib, Sarwar, Abid, Ali Khan, Ayaz, Zhennai, Yang, Alharbi, Metab, Alsahammari, Abdulrahman, Alasmari, Abdullah F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10346846/
https://www.ncbi.nlm.nih.gov/pubmed/37455721
http://dx.doi.org/10.3389/fmicb.2023.1214478
_version_ 1785073409845100544
author Aziz, Tariq
Naveed, Muhammad
Shabbir, Muhammad Aqib
Sarwar, Abid
Ali Khan, Ayaz
Zhennai, Yang
Alharbi, Metab
Alsahammari, Abdulrahman
Alasmari, Abdullah F.
author_facet Aziz, Tariq
Naveed, Muhammad
Shabbir, Muhammad Aqib
Sarwar, Abid
Ali Khan, Ayaz
Zhennai, Yang
Alharbi, Metab
Alsahammari, Abdulrahman
Alasmari, Abdullah F.
author_sort Aziz, Tariq
collection PubMed
description This study aimed to investigate the intricate genetic makeup of the Lactiplantibacillus plantarum K25 strain by conducting a comprehensive analysis of comparative genomics. The results of our study demonstrate that the genome exhibits a high-level efficiency and compactness, comprising a total of 3,199 genes that encode proteins and a GC content of 43.38%. The present study elucidates the evolutionary lineage of Lactiplantibacillus plantarum strains through an analysis of the degree of gene order conservation and synteny across a range of strains, thereby underscoring their closely interrelated evolutionary trajectories. The identification of various genetic components in the K25 strain, such as bacteriocin gene clusters and prophage regions, highlights its potential utility in diverse domains, such as biotechnology and medicine. The distinctive genetic elements possess the potential to unveil innovative therapeutic and biotechnological remedies in future. This study provides a comprehensive analysis of the L. plantarum K25 strain, revealing its remarkable genomic potential and presenting novel prospects for utilizing its unique genetic features in diverse scientific fields. The present study contributes to the existing literature on Lactiplantibacillus plantarum and sets the stage for prospective investigations and practical implementations that leverage the exceptional genetic characteristics of this adap organism.
format Online
Article
Text
id pubmed-10346846
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-103468462023-07-15 Comparative genomics of food-derived probiotic Lactiplantibacillus plantarum K25 reveals its hidden potential, compactness, and efficiency Aziz, Tariq Naveed, Muhammad Shabbir, Muhammad Aqib Sarwar, Abid Ali Khan, Ayaz Zhennai, Yang Alharbi, Metab Alsahammari, Abdulrahman Alasmari, Abdullah F. Front Microbiol Microbiology This study aimed to investigate the intricate genetic makeup of the Lactiplantibacillus plantarum K25 strain by conducting a comprehensive analysis of comparative genomics. The results of our study demonstrate that the genome exhibits a high-level efficiency and compactness, comprising a total of 3,199 genes that encode proteins and a GC content of 43.38%. The present study elucidates the evolutionary lineage of Lactiplantibacillus plantarum strains through an analysis of the degree of gene order conservation and synteny across a range of strains, thereby underscoring their closely interrelated evolutionary trajectories. The identification of various genetic components in the K25 strain, such as bacteriocin gene clusters and prophage regions, highlights its potential utility in diverse domains, such as biotechnology and medicine. The distinctive genetic elements possess the potential to unveil innovative therapeutic and biotechnological remedies in future. This study provides a comprehensive analysis of the L. plantarum K25 strain, revealing its remarkable genomic potential and presenting novel prospects for utilizing its unique genetic features in diverse scientific fields. The present study contributes to the existing literature on Lactiplantibacillus plantarum and sets the stage for prospective investigations and practical implementations that leverage the exceptional genetic characteristics of this adap organism. Frontiers Media S.A. 2023-06-14 /pmc/articles/PMC10346846/ /pubmed/37455721 http://dx.doi.org/10.3389/fmicb.2023.1214478 Text en Copyright © 2023 Aziz, Naveed, Shabbir, Sarwar, Ali Khan, Zhennai, Alharbi, Alsahammari and Alasmari. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Aziz, Tariq
Naveed, Muhammad
Shabbir, Muhammad Aqib
Sarwar, Abid
Ali Khan, Ayaz
Zhennai, Yang
Alharbi, Metab
Alsahammari, Abdulrahman
Alasmari, Abdullah F.
Comparative genomics of food-derived probiotic Lactiplantibacillus plantarum K25 reveals its hidden potential, compactness, and efficiency
title Comparative genomics of food-derived probiotic Lactiplantibacillus plantarum K25 reveals its hidden potential, compactness, and efficiency
title_full Comparative genomics of food-derived probiotic Lactiplantibacillus plantarum K25 reveals its hidden potential, compactness, and efficiency
title_fullStr Comparative genomics of food-derived probiotic Lactiplantibacillus plantarum K25 reveals its hidden potential, compactness, and efficiency
title_full_unstemmed Comparative genomics of food-derived probiotic Lactiplantibacillus plantarum K25 reveals its hidden potential, compactness, and efficiency
title_short Comparative genomics of food-derived probiotic Lactiplantibacillus plantarum K25 reveals its hidden potential, compactness, and efficiency
title_sort comparative genomics of food-derived probiotic lactiplantibacillus plantarum k25 reveals its hidden potential, compactness, and efficiency
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10346846/
https://www.ncbi.nlm.nih.gov/pubmed/37455721
http://dx.doi.org/10.3389/fmicb.2023.1214478
work_keys_str_mv AT aziztariq comparativegenomicsoffoodderivedprobioticlactiplantibacillusplantarumk25revealsitshiddenpotentialcompactnessandefficiency
AT naveedmuhammad comparativegenomicsoffoodderivedprobioticlactiplantibacillusplantarumk25revealsitshiddenpotentialcompactnessandefficiency
AT shabbirmuhammadaqib comparativegenomicsoffoodderivedprobioticlactiplantibacillusplantarumk25revealsitshiddenpotentialcompactnessandefficiency
AT sarwarabid comparativegenomicsoffoodderivedprobioticlactiplantibacillusplantarumk25revealsitshiddenpotentialcompactnessandefficiency
AT alikhanayaz comparativegenomicsoffoodderivedprobioticlactiplantibacillusplantarumk25revealsitshiddenpotentialcompactnessandefficiency
AT zhennaiyang comparativegenomicsoffoodderivedprobioticlactiplantibacillusplantarumk25revealsitshiddenpotentialcompactnessandefficiency
AT alharbimetab comparativegenomicsoffoodderivedprobioticlactiplantibacillusplantarumk25revealsitshiddenpotentialcompactnessandefficiency
AT alsahammariabdulrahman comparativegenomicsoffoodderivedprobioticlactiplantibacillusplantarumk25revealsitshiddenpotentialcompactnessandefficiency
AT alasmariabdullahf comparativegenomicsoffoodderivedprobioticlactiplantibacillusplantarumk25revealsitshiddenpotentialcompactnessandefficiency