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Comparative genomics of food-derived probiotic Lactiplantibacillus plantarum K25 reveals its hidden potential, compactness, and efficiency
This study aimed to investigate the intricate genetic makeup of the Lactiplantibacillus plantarum K25 strain by conducting a comprehensive analysis of comparative genomics. The results of our study demonstrate that the genome exhibits a high-level efficiency and compactness, comprising a total of 3,...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10346846/ https://www.ncbi.nlm.nih.gov/pubmed/37455721 http://dx.doi.org/10.3389/fmicb.2023.1214478 |
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author | Aziz, Tariq Naveed, Muhammad Shabbir, Muhammad Aqib Sarwar, Abid Ali Khan, Ayaz Zhennai, Yang Alharbi, Metab Alsahammari, Abdulrahman Alasmari, Abdullah F. |
author_facet | Aziz, Tariq Naveed, Muhammad Shabbir, Muhammad Aqib Sarwar, Abid Ali Khan, Ayaz Zhennai, Yang Alharbi, Metab Alsahammari, Abdulrahman Alasmari, Abdullah F. |
author_sort | Aziz, Tariq |
collection | PubMed |
description | This study aimed to investigate the intricate genetic makeup of the Lactiplantibacillus plantarum K25 strain by conducting a comprehensive analysis of comparative genomics. The results of our study demonstrate that the genome exhibits a high-level efficiency and compactness, comprising a total of 3,199 genes that encode proteins and a GC content of 43.38%. The present study elucidates the evolutionary lineage of Lactiplantibacillus plantarum strains through an analysis of the degree of gene order conservation and synteny across a range of strains, thereby underscoring their closely interrelated evolutionary trajectories. The identification of various genetic components in the K25 strain, such as bacteriocin gene clusters and prophage regions, highlights its potential utility in diverse domains, such as biotechnology and medicine. The distinctive genetic elements possess the potential to unveil innovative therapeutic and biotechnological remedies in future. This study provides a comprehensive analysis of the L. plantarum K25 strain, revealing its remarkable genomic potential and presenting novel prospects for utilizing its unique genetic features in diverse scientific fields. The present study contributes to the existing literature on Lactiplantibacillus plantarum and sets the stage for prospective investigations and practical implementations that leverage the exceptional genetic characteristics of this adap organism. |
format | Online Article Text |
id | pubmed-10346846 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-103468462023-07-15 Comparative genomics of food-derived probiotic Lactiplantibacillus plantarum K25 reveals its hidden potential, compactness, and efficiency Aziz, Tariq Naveed, Muhammad Shabbir, Muhammad Aqib Sarwar, Abid Ali Khan, Ayaz Zhennai, Yang Alharbi, Metab Alsahammari, Abdulrahman Alasmari, Abdullah F. Front Microbiol Microbiology This study aimed to investigate the intricate genetic makeup of the Lactiplantibacillus plantarum K25 strain by conducting a comprehensive analysis of comparative genomics. The results of our study demonstrate that the genome exhibits a high-level efficiency and compactness, comprising a total of 3,199 genes that encode proteins and a GC content of 43.38%. The present study elucidates the evolutionary lineage of Lactiplantibacillus plantarum strains through an analysis of the degree of gene order conservation and synteny across a range of strains, thereby underscoring their closely interrelated evolutionary trajectories. The identification of various genetic components in the K25 strain, such as bacteriocin gene clusters and prophage regions, highlights its potential utility in diverse domains, such as biotechnology and medicine. The distinctive genetic elements possess the potential to unveil innovative therapeutic and biotechnological remedies in future. This study provides a comprehensive analysis of the L. plantarum K25 strain, revealing its remarkable genomic potential and presenting novel prospects for utilizing its unique genetic features in diverse scientific fields. The present study contributes to the existing literature on Lactiplantibacillus plantarum and sets the stage for prospective investigations and practical implementations that leverage the exceptional genetic characteristics of this adap organism. Frontiers Media S.A. 2023-06-14 /pmc/articles/PMC10346846/ /pubmed/37455721 http://dx.doi.org/10.3389/fmicb.2023.1214478 Text en Copyright © 2023 Aziz, Naveed, Shabbir, Sarwar, Ali Khan, Zhennai, Alharbi, Alsahammari and Alasmari. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Aziz, Tariq Naveed, Muhammad Shabbir, Muhammad Aqib Sarwar, Abid Ali Khan, Ayaz Zhennai, Yang Alharbi, Metab Alsahammari, Abdulrahman Alasmari, Abdullah F. Comparative genomics of food-derived probiotic Lactiplantibacillus plantarum K25 reveals its hidden potential, compactness, and efficiency |
title | Comparative genomics of food-derived probiotic Lactiplantibacillus plantarum K25 reveals its hidden potential, compactness, and efficiency |
title_full | Comparative genomics of food-derived probiotic Lactiplantibacillus plantarum K25 reveals its hidden potential, compactness, and efficiency |
title_fullStr | Comparative genomics of food-derived probiotic Lactiplantibacillus plantarum K25 reveals its hidden potential, compactness, and efficiency |
title_full_unstemmed | Comparative genomics of food-derived probiotic Lactiplantibacillus plantarum K25 reveals its hidden potential, compactness, and efficiency |
title_short | Comparative genomics of food-derived probiotic Lactiplantibacillus plantarum K25 reveals its hidden potential, compactness, and efficiency |
title_sort | comparative genomics of food-derived probiotic lactiplantibacillus plantarum k25 reveals its hidden potential, compactness, and efficiency |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10346846/ https://www.ncbi.nlm.nih.gov/pubmed/37455721 http://dx.doi.org/10.3389/fmicb.2023.1214478 |
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