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Genome-Wide Identification and Functional Characterization of FAR1-RELATED SEQUENCE (FRS) Family Members in Potato (Solanum tuberosum)

FAR1-RELATED SEQUENCE (FRS) transcription factors are generated by transposases and play vital roles in plant growth and development, light signaling transduction, phytohormone response, and stress resistance. FRSs have been described in various plant species. However, FRS family members and their f...

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Autores principales: Chen, Qingshuai, Song, Yang, Liu, Kui, Su, Chen, Yu, Ru, Li, Ying, Yang, Yi, Zhou, Bailing, Wang, Jihua, Hu, Guodong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10347153/
https://www.ncbi.nlm.nih.gov/pubmed/37447143
http://dx.doi.org/10.3390/plants12132575
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author Chen, Qingshuai
Song, Yang
Liu, Kui
Su, Chen
Yu, Ru
Li, Ying
Yang, Yi
Zhou, Bailing
Wang, Jihua
Hu, Guodong
author_facet Chen, Qingshuai
Song, Yang
Liu, Kui
Su, Chen
Yu, Ru
Li, Ying
Yang, Yi
Zhou, Bailing
Wang, Jihua
Hu, Guodong
author_sort Chen, Qingshuai
collection PubMed
description FAR1-RELATED SEQUENCE (FRS) transcription factors are generated by transposases and play vital roles in plant growth and development, light signaling transduction, phytohormone response, and stress resistance. FRSs have been described in various plant species. However, FRS family members and their functions remain poorly understood in vegetative crops such as potato (Solanum tuberosum, St). In the present study, 20 putative StFRS proteins were identified in potato via genome-wide analysis. They were non-randomly localized to eight chromosomes and phylogenetic analysis classified them into six subgroups along with FRS proteins from Arabidopsis and tomato. Conserved protein motif, protein domain, and gene structure analyses supported the evolutionary relationships among the FRS proteins. Analysis of the cis-acting elements in the promoters and the expression profiles of StFRSs in various plant tissues and under different stress treatments revealed the spatiotemporal expression patterns and the potential roles of StFRSs in phytohormonal and stress responses. StFRSs were differentially expressed in the cultivar “Xisen 6”, which is exposed to a variety of stresses. Hence, these genes may be critical in regulating abiotic stress. Elucidating the StFRS functions will lay theoretical and empirical foundations for the molecular breeding of potato varieties with high light use efficiency and stress resistance.
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spelling pubmed-103471532023-07-15 Genome-Wide Identification and Functional Characterization of FAR1-RELATED SEQUENCE (FRS) Family Members in Potato (Solanum tuberosum) Chen, Qingshuai Song, Yang Liu, Kui Su, Chen Yu, Ru Li, Ying Yang, Yi Zhou, Bailing Wang, Jihua Hu, Guodong Plants (Basel) Article FAR1-RELATED SEQUENCE (FRS) transcription factors are generated by transposases and play vital roles in plant growth and development, light signaling transduction, phytohormone response, and stress resistance. FRSs have been described in various plant species. However, FRS family members and their functions remain poorly understood in vegetative crops such as potato (Solanum tuberosum, St). In the present study, 20 putative StFRS proteins were identified in potato via genome-wide analysis. They were non-randomly localized to eight chromosomes and phylogenetic analysis classified them into six subgroups along with FRS proteins from Arabidopsis and tomato. Conserved protein motif, protein domain, and gene structure analyses supported the evolutionary relationships among the FRS proteins. Analysis of the cis-acting elements in the promoters and the expression profiles of StFRSs in various plant tissues and under different stress treatments revealed the spatiotemporal expression patterns and the potential roles of StFRSs in phytohormonal and stress responses. StFRSs were differentially expressed in the cultivar “Xisen 6”, which is exposed to a variety of stresses. Hence, these genes may be critical in regulating abiotic stress. Elucidating the StFRS functions will lay theoretical and empirical foundations for the molecular breeding of potato varieties with high light use efficiency and stress resistance. MDPI 2023-07-07 /pmc/articles/PMC10347153/ /pubmed/37447143 http://dx.doi.org/10.3390/plants12132575 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Chen, Qingshuai
Song, Yang
Liu, Kui
Su, Chen
Yu, Ru
Li, Ying
Yang, Yi
Zhou, Bailing
Wang, Jihua
Hu, Guodong
Genome-Wide Identification and Functional Characterization of FAR1-RELATED SEQUENCE (FRS) Family Members in Potato (Solanum tuberosum)
title Genome-Wide Identification and Functional Characterization of FAR1-RELATED SEQUENCE (FRS) Family Members in Potato (Solanum tuberosum)
title_full Genome-Wide Identification and Functional Characterization of FAR1-RELATED SEQUENCE (FRS) Family Members in Potato (Solanum tuberosum)
title_fullStr Genome-Wide Identification and Functional Characterization of FAR1-RELATED SEQUENCE (FRS) Family Members in Potato (Solanum tuberosum)
title_full_unstemmed Genome-Wide Identification and Functional Characterization of FAR1-RELATED SEQUENCE (FRS) Family Members in Potato (Solanum tuberosum)
title_short Genome-Wide Identification and Functional Characterization of FAR1-RELATED SEQUENCE (FRS) Family Members in Potato (Solanum tuberosum)
title_sort genome-wide identification and functional characterization of far1-related sequence (frs) family members in potato (solanum tuberosum)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10347153/
https://www.ncbi.nlm.nih.gov/pubmed/37447143
http://dx.doi.org/10.3390/plants12132575
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