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Efficient Noninvasive FHB Estimation using RGB Images from a Novel Multiyear, Multirater Dataset
Fusarium head blight (FHB) is one of the most prevalent wheat diseases, causing substantial yield losses and health risks. Efficient phenotyping of FHB is crucial for accelerating resistance breeding, but currently used methods are time-consuming and expensive. The present article suggests a noninva...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
AAAS
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10348660/ https://www.ncbi.nlm.nih.gov/pubmed/37456082 http://dx.doi.org/10.34133/plantphenomics.0068 |
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author | Rößle, Dominik Prey, Lukas Ramgraber, Ludwig Hanemann, Anja Cremers, Daniel Noack, Patrick Ole Schön, Torsten |
author_facet | Rößle, Dominik Prey, Lukas Ramgraber, Ludwig Hanemann, Anja Cremers, Daniel Noack, Patrick Ole Schön, Torsten |
author_sort | Rößle, Dominik |
collection | PubMed |
description | Fusarium head blight (FHB) is one of the most prevalent wheat diseases, causing substantial yield losses and health risks. Efficient phenotyping of FHB is crucial for accelerating resistance breeding, but currently used methods are time-consuming and expensive. The present article suggests a noninvasive classification model for FHB severity estimation using red–green–blue (RGB) images, without requiring extensive preprocessing. The model accepts images taken from consumer-grade, low-cost RGB cameras and classifies the FHB severity into 6 ordinal levels. In addition, we introduce a novel dataset consisting of around 3,000 images from 3 different years (2020, 2021, and 2022) and 2 FHB severity assessments per image from independent raters. We used a pretrained EfficientNet (size b0), redesigned as a regression model. The results demonstrate that the interrater reliability (Cohen’s kappa, κ) is substantially lower than the achieved individual network-to-rater results, e.g., 0.68 and 0.76 for the data captured in 2020, respectively. The model shows a generalization effect when trained with data from multiple years and tested on data from an independent year. Thus, using the images from 2020 and 2021 for training and 2022 for testing, we improved the [Formula: see text] score by 0.14, the accuracy by 0.11, κ by 0.12, and reduced the root mean squared error by 0.5 compared to the best network trained only on a single year’s data. The proposed lightweight model and methods could be deployed on mobile devices to automatically and objectively assess FHB severity with images from low-cost RGB cameras. The source code and the dataset are available at https://github.com/cvims/FHB_classification. |
format | Online Article Text |
id | pubmed-10348660 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | AAAS |
record_format | MEDLINE/PubMed |
spelling | pubmed-103486602023-07-15 Efficient Noninvasive FHB Estimation using RGB Images from a Novel Multiyear, Multirater Dataset Rößle, Dominik Prey, Lukas Ramgraber, Ludwig Hanemann, Anja Cremers, Daniel Noack, Patrick Ole Schön, Torsten Plant Phenomics Research Article Fusarium head blight (FHB) is one of the most prevalent wheat diseases, causing substantial yield losses and health risks. Efficient phenotyping of FHB is crucial for accelerating resistance breeding, but currently used methods are time-consuming and expensive. The present article suggests a noninvasive classification model for FHB severity estimation using red–green–blue (RGB) images, without requiring extensive preprocessing. The model accepts images taken from consumer-grade, low-cost RGB cameras and classifies the FHB severity into 6 ordinal levels. In addition, we introduce a novel dataset consisting of around 3,000 images from 3 different years (2020, 2021, and 2022) and 2 FHB severity assessments per image from independent raters. We used a pretrained EfficientNet (size b0), redesigned as a regression model. The results demonstrate that the interrater reliability (Cohen’s kappa, κ) is substantially lower than the achieved individual network-to-rater results, e.g., 0.68 and 0.76 for the data captured in 2020, respectively. The model shows a generalization effect when trained with data from multiple years and tested on data from an independent year. Thus, using the images from 2020 and 2021 for training and 2022 for testing, we improved the [Formula: see text] score by 0.14, the accuracy by 0.11, κ by 0.12, and reduced the root mean squared error by 0.5 compared to the best network trained only on a single year’s data. The proposed lightweight model and methods could be deployed on mobile devices to automatically and objectively assess FHB severity with images from low-cost RGB cameras. The source code and the dataset are available at https://github.com/cvims/FHB_classification. AAAS 2023-07-14 /pmc/articles/PMC10348660/ /pubmed/37456082 http://dx.doi.org/10.34133/plantphenomics.0068 Text en Copyright © 2023 Dominik Rößle et al. https://creativecommons.org/licenses/by/4.0/Exclusive licensee Nanjing Agricultural University. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY 4.0) (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Research Article Rößle, Dominik Prey, Lukas Ramgraber, Ludwig Hanemann, Anja Cremers, Daniel Noack, Patrick Ole Schön, Torsten Efficient Noninvasive FHB Estimation using RGB Images from a Novel Multiyear, Multirater Dataset |
title | Efficient Noninvasive FHB Estimation using RGB Images from a Novel Multiyear, Multirater Dataset |
title_full | Efficient Noninvasive FHB Estimation using RGB Images from a Novel Multiyear, Multirater Dataset |
title_fullStr | Efficient Noninvasive FHB Estimation using RGB Images from a Novel Multiyear, Multirater Dataset |
title_full_unstemmed | Efficient Noninvasive FHB Estimation using RGB Images from a Novel Multiyear, Multirater Dataset |
title_short | Efficient Noninvasive FHB Estimation using RGB Images from a Novel Multiyear, Multirater Dataset |
title_sort | efficient noninvasive fhb estimation using rgb images from a novel multiyear, multirater dataset |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10348660/ https://www.ncbi.nlm.nih.gov/pubmed/37456082 http://dx.doi.org/10.34133/plantphenomics.0068 |
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