Cargando…
Counting pseudoalignments to novel splicing events
MOTIVATION: Alternative splicing (AS) of introns from pre-mRNA produces diverse sets of transcripts across cell types and tissues, but is also dysregulated in many diseases. Alignment-free computational methods have greatly accelerated the quantification of mRNA transcripts from short RNA-seq reads,...
Autores principales: | Borozan, Luka, Rojas Ringeling, Francisca, Kao, Shao-Yen, Nikonova, Elena, Monteagudo-Mesas, Pablo, Matijević, Domagoj, Spletter, Maria L, Canzar, Stefan |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10348833/ https://www.ncbi.nlm.nih.gov/pubmed/37432342 http://dx.doi.org/10.1093/bioinformatics/btad419 |
Ejemplares similares
-
Linear-time cluster ensembles of large-scale single-cell RNA-seq and multimodal data
por: Do, Van Hoan, et al.
Publicado: (2021) -
Using pseudoalignment and base quality to accurately quantify microbial community composition
por: Reppell, Mark, et al.
Publicado: (2018) -
Ccr4–Not complex reduces transcription efficiency in heterochromatin
por: Monteagudo-Mesas, Pablo, et al.
Publicado: (2022) -
Alternative splicing regulates stochastic NLRP3 activity
por: Hoss, Florian, et al.
Publicado: (2019) -
Pseudoalignment tools as an efficient alternative to detect repeated transposable elements in scRNAseq data
por: de Villarreal, Jaime Martínez, et al.
Publicado: (2022)