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A decision support system based on artificial intelligence and systems biology for the simulation of pancreatic cancer patient status

Oncology treatments require continuous individual adjustment based on the measurement of multiple clinical parameters. Prediction tools exploiting the patterns present in the clinical data could be used to assist decision making and ease the burden associated to the interpretation of all these param...

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Autores principales: Junet, Valentin, Matos‐Filipe, Pedro, García‐Illarramendi, Juan Manuel, Ramírez, Esther, Oliva, Baldo, Farrés, Judith, Daura, Xavier, Mas, José Manuel, Morales, Rafael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10349189/
https://www.ncbi.nlm.nih.gov/pubmed/37002678
http://dx.doi.org/10.1002/psp4.12961
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author Junet, Valentin
Matos‐Filipe, Pedro
García‐Illarramendi, Juan Manuel
Ramírez, Esther
Oliva, Baldo
Farrés, Judith
Daura, Xavier
Mas, José Manuel
Morales, Rafael
author_facet Junet, Valentin
Matos‐Filipe, Pedro
García‐Illarramendi, Juan Manuel
Ramírez, Esther
Oliva, Baldo
Farrés, Judith
Daura, Xavier
Mas, José Manuel
Morales, Rafael
author_sort Junet, Valentin
collection PubMed
description Oncology treatments require continuous individual adjustment based on the measurement of multiple clinical parameters. Prediction tools exploiting the patterns present in the clinical data could be used to assist decision making and ease the burden associated to the interpretation of all these parameters. The goal of this study was to predict the evolution of patients with pancreatic cancer at their next visit using information routinely recorded in health records, providing a decision‐support system for clinicians. We selected hematological variables as the visit's clinical outcomes, under the assumption that they can be predictive of the evolution of the patient. Multivariate models based on regression trees were generated to predict next‐visit values for each of the clinical outcomes selected, based on the longitudinal clinical data as well as on molecular data sets streaming from in silico simulations of individual patient status at each visit. The models predict, with a mean prediction score (balanced accuracy) of 0.79, the evolution trends of eosinophils, leukocytes, monocytes, and platelets. Time span between visits and neutropenia were among the most common factors contributing to the predicted evolution. The inclusion of molecular variables from the systems‐biology in silico simulations provided a molecular background for the observed variations in the selected outcome variables, mostly in relation to the regulation of hematopoiesis. In spite of its limitations, this study serves as a proof of concept for the application of next‐visit prediction tools in real‐world settings, even when available data sets are small.
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spelling pubmed-103491892023-07-16 A decision support system based on artificial intelligence and systems biology for the simulation of pancreatic cancer patient status Junet, Valentin Matos‐Filipe, Pedro García‐Illarramendi, Juan Manuel Ramírez, Esther Oliva, Baldo Farrés, Judith Daura, Xavier Mas, José Manuel Morales, Rafael CPT Pharmacometrics Syst Pharmacol Research Oncology treatments require continuous individual adjustment based on the measurement of multiple clinical parameters. Prediction tools exploiting the patterns present in the clinical data could be used to assist decision making and ease the burden associated to the interpretation of all these parameters. The goal of this study was to predict the evolution of patients with pancreatic cancer at their next visit using information routinely recorded in health records, providing a decision‐support system for clinicians. We selected hematological variables as the visit's clinical outcomes, under the assumption that they can be predictive of the evolution of the patient. Multivariate models based on regression trees were generated to predict next‐visit values for each of the clinical outcomes selected, based on the longitudinal clinical data as well as on molecular data sets streaming from in silico simulations of individual patient status at each visit. The models predict, with a mean prediction score (balanced accuracy) of 0.79, the evolution trends of eosinophils, leukocytes, monocytes, and platelets. Time span between visits and neutropenia were among the most common factors contributing to the predicted evolution. The inclusion of molecular variables from the systems‐biology in silico simulations provided a molecular background for the observed variations in the selected outcome variables, mostly in relation to the regulation of hematopoiesis. In spite of its limitations, this study serves as a proof of concept for the application of next‐visit prediction tools in real‐world settings, even when available data sets are small. John Wiley and Sons Inc. 2023-03-31 /pmc/articles/PMC10349189/ /pubmed/37002678 http://dx.doi.org/10.1002/psp4.12961 Text en © 2023 The Authors. CPT: Pharmacometrics & Systems Pharmacology published by Wiley Periodicals LLC on behalf of American Society for Clinical Pharmacology and Therapeutics. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research
Junet, Valentin
Matos‐Filipe, Pedro
García‐Illarramendi, Juan Manuel
Ramírez, Esther
Oliva, Baldo
Farrés, Judith
Daura, Xavier
Mas, José Manuel
Morales, Rafael
A decision support system based on artificial intelligence and systems biology for the simulation of pancreatic cancer patient status
title A decision support system based on artificial intelligence and systems biology for the simulation of pancreatic cancer patient status
title_full A decision support system based on artificial intelligence and systems biology for the simulation of pancreatic cancer patient status
title_fullStr A decision support system based on artificial intelligence and systems biology for the simulation of pancreatic cancer patient status
title_full_unstemmed A decision support system based on artificial intelligence and systems biology for the simulation of pancreatic cancer patient status
title_short A decision support system based on artificial intelligence and systems biology for the simulation of pancreatic cancer patient status
title_sort decision support system based on artificial intelligence and systems biology for the simulation of pancreatic cancer patient status
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10349189/
https://www.ncbi.nlm.nih.gov/pubmed/37002678
http://dx.doi.org/10.1002/psp4.12961
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