Cargando…
Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub
Our ability to forecast epidemics more than a few weeks into the future is constrained by the complexity of disease systems, our limited ability to measure the current state of an epidemic, and uncertainties in how human action will affect transmission. Realistic longer-term projections (spanning mo...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10350156/ https://www.ncbi.nlm.nih.gov/pubmed/37461674 http://dx.doi.org/10.1101/2023.06.28.23291998 |
_version_ | 1785074070637772800 |
---|---|
author | Howerton, Emily Contamin, Lucie Mullany, Luke C Qin, Michelle Reich, Nicholas G. Bents, Samantha Borchering, Rebecca K. Jung, Sung-mok Loo, Sara L. Smith, Claire P. Levander, John Kerr, Jessica Espino, J. van Panhuis, Willem G. Hochheiser, Harry Galanti, Marta Yamana, Teresa Pei, Sen Shaman, Jeffrey Rainwater-Lovett, Kaitlin Kinsey, Matt Tallaksen, Kate Wilson, Shelby Shin, Lauren Lemaitre, Joseph C. Kaminsky, Joshua Hulse, Juan Dent Lee, Elizabeth C. McKee, Clif Hill, Alison Karlen, Dean Chinazzi, Matteo Davis, Jessica T. Mu, Kunpeng Xiong, Xinyue Piontti, Ana Pastore y Vespignani, Alessandro Rosenstrom, Erik T. Ivy, Julie S. Mayorga, Maria E. Swann, Julie L. España, Guido Cavany, Sean Moore, Sean Perkins, Alex Hladish, Thomas Pillai, Alexander Toh, Kok Ben Longini, Ira Chen, Shi Paul, Rajib Janies, Daniel Thill, Jean-Claude Bouchnita, Anass Bi, Kaiming Lachmann, Michael Fox, Spencer Meyers, Lauren Ancel Srivastava, Ajitesh Porebski, Przemyslaw Venkatramanan, Srini Adiga, Aniruddha Lewis, Bryan Klahn, Brian Outten, Joseph Hurt, Benjamin Chen, Jiangzhuo Mortveit, Henning Wilson, Amanda Marathe, Madhav Hoops, Stefan Bhattacharya, Parantapa Machi, Dustin Cadwell, Betsy L. Healy, Jessica M. Slayton, Rachel B. Johansson, Michael A. Biggerstaff, Matthew Truelove, Shaun Runge, Michael C. Shea, Katriona Viboud, Cécile Lessler, Justin |
author_facet | Howerton, Emily Contamin, Lucie Mullany, Luke C Qin, Michelle Reich, Nicholas G. Bents, Samantha Borchering, Rebecca K. Jung, Sung-mok Loo, Sara L. Smith, Claire P. Levander, John Kerr, Jessica Espino, J. van Panhuis, Willem G. Hochheiser, Harry Galanti, Marta Yamana, Teresa Pei, Sen Shaman, Jeffrey Rainwater-Lovett, Kaitlin Kinsey, Matt Tallaksen, Kate Wilson, Shelby Shin, Lauren Lemaitre, Joseph C. Kaminsky, Joshua Hulse, Juan Dent Lee, Elizabeth C. McKee, Clif Hill, Alison Karlen, Dean Chinazzi, Matteo Davis, Jessica T. Mu, Kunpeng Xiong, Xinyue Piontti, Ana Pastore y Vespignani, Alessandro Rosenstrom, Erik T. Ivy, Julie S. Mayorga, Maria E. Swann, Julie L. España, Guido Cavany, Sean Moore, Sean Perkins, Alex Hladish, Thomas Pillai, Alexander Toh, Kok Ben Longini, Ira Chen, Shi Paul, Rajib Janies, Daniel Thill, Jean-Claude Bouchnita, Anass Bi, Kaiming Lachmann, Michael Fox, Spencer Meyers, Lauren Ancel Srivastava, Ajitesh Porebski, Przemyslaw Venkatramanan, Srini Adiga, Aniruddha Lewis, Bryan Klahn, Brian Outten, Joseph Hurt, Benjamin Chen, Jiangzhuo Mortveit, Henning Wilson, Amanda Marathe, Madhav Hoops, Stefan Bhattacharya, Parantapa Machi, Dustin Cadwell, Betsy L. Healy, Jessica M. Slayton, Rachel B. Johansson, Michael A. Biggerstaff, Matthew Truelove, Shaun Runge, Michael C. Shea, Katriona Viboud, Cécile Lessler, Justin |
author_sort | Howerton, Emily |
collection | PubMed |
description | Our ability to forecast epidemics more than a few weeks into the future is constrained by the complexity of disease systems, our limited ability to measure the current state of an epidemic, and uncertainties in how human action will affect transmission. Realistic longer-term projections (spanning more than a few weeks) may, however, be possible under defined scenarios that specify the future state of critical epidemic drivers, with the additional benefit that such scenarios can be used to anticipate the comparative effect of control measures. Since December 2020, the U.S. COVID-19 Scenario Modeling Hub (SMH) has convened multiple modeling teams to make 6-month ahead projections of the number of SARS-CoV-2 cases, hospitalizations and deaths. The SMH released nearly 1.8 million national and state-level projections between February 2021 and November 2022. SMH performance varied widely as a function of both scenario validity and model calibration. Scenario assumptions were periodically invalidated by the arrival of unanticipated SARS-CoV-2 variants, but SMH still provided projections on average 22 weeks before changes in assumptions (such as virus transmissibility) invalidated scenarios and their corresponding projections. During these periods, before emergence of a novel variant, a linear opinion pool ensemble of contributed models was consistently more reliable than any single model, and projection interval coverage was near target levels for the most plausible scenarios (e.g., 79% coverage for 95% projection interval). SMH projections were used operationally to guide planning and policy at different stages of the pandemic, illustrating the value of the hub approach for long-term scenario projections. |
format | Online Article Text |
id | pubmed-10350156 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cold Spring Harbor Laboratory |
record_format | MEDLINE/PubMed |
spelling | pubmed-103501562023-07-17 Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub Howerton, Emily Contamin, Lucie Mullany, Luke C Qin, Michelle Reich, Nicholas G. Bents, Samantha Borchering, Rebecca K. Jung, Sung-mok Loo, Sara L. Smith, Claire P. Levander, John Kerr, Jessica Espino, J. van Panhuis, Willem G. Hochheiser, Harry Galanti, Marta Yamana, Teresa Pei, Sen Shaman, Jeffrey Rainwater-Lovett, Kaitlin Kinsey, Matt Tallaksen, Kate Wilson, Shelby Shin, Lauren Lemaitre, Joseph C. Kaminsky, Joshua Hulse, Juan Dent Lee, Elizabeth C. McKee, Clif Hill, Alison Karlen, Dean Chinazzi, Matteo Davis, Jessica T. Mu, Kunpeng Xiong, Xinyue Piontti, Ana Pastore y Vespignani, Alessandro Rosenstrom, Erik T. Ivy, Julie S. Mayorga, Maria E. Swann, Julie L. España, Guido Cavany, Sean Moore, Sean Perkins, Alex Hladish, Thomas Pillai, Alexander Toh, Kok Ben Longini, Ira Chen, Shi Paul, Rajib Janies, Daniel Thill, Jean-Claude Bouchnita, Anass Bi, Kaiming Lachmann, Michael Fox, Spencer Meyers, Lauren Ancel Srivastava, Ajitesh Porebski, Przemyslaw Venkatramanan, Srini Adiga, Aniruddha Lewis, Bryan Klahn, Brian Outten, Joseph Hurt, Benjamin Chen, Jiangzhuo Mortveit, Henning Wilson, Amanda Marathe, Madhav Hoops, Stefan Bhattacharya, Parantapa Machi, Dustin Cadwell, Betsy L. Healy, Jessica M. Slayton, Rachel B. Johansson, Michael A. Biggerstaff, Matthew Truelove, Shaun Runge, Michael C. Shea, Katriona Viboud, Cécile Lessler, Justin medRxiv Article Our ability to forecast epidemics more than a few weeks into the future is constrained by the complexity of disease systems, our limited ability to measure the current state of an epidemic, and uncertainties in how human action will affect transmission. Realistic longer-term projections (spanning more than a few weeks) may, however, be possible under defined scenarios that specify the future state of critical epidemic drivers, with the additional benefit that such scenarios can be used to anticipate the comparative effect of control measures. Since December 2020, the U.S. COVID-19 Scenario Modeling Hub (SMH) has convened multiple modeling teams to make 6-month ahead projections of the number of SARS-CoV-2 cases, hospitalizations and deaths. The SMH released nearly 1.8 million national and state-level projections between February 2021 and November 2022. SMH performance varied widely as a function of both scenario validity and model calibration. Scenario assumptions were periodically invalidated by the arrival of unanticipated SARS-CoV-2 variants, but SMH still provided projections on average 22 weeks before changes in assumptions (such as virus transmissibility) invalidated scenarios and their corresponding projections. During these periods, before emergence of a novel variant, a linear opinion pool ensemble of contributed models was consistently more reliable than any single model, and projection interval coverage was near target levels for the most plausible scenarios (e.g., 79% coverage for 95% projection interval). SMH projections were used operationally to guide planning and policy at different stages of the pandemic, illustrating the value of the hub approach for long-term scenario projections. Cold Spring Harbor Laboratory 2023-07-03 /pmc/articles/PMC10350156/ /pubmed/37461674 http://dx.doi.org/10.1101/2023.06.28.23291998 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use. |
spellingShingle | Article Howerton, Emily Contamin, Lucie Mullany, Luke C Qin, Michelle Reich, Nicholas G. Bents, Samantha Borchering, Rebecca K. Jung, Sung-mok Loo, Sara L. Smith, Claire P. Levander, John Kerr, Jessica Espino, J. van Panhuis, Willem G. Hochheiser, Harry Galanti, Marta Yamana, Teresa Pei, Sen Shaman, Jeffrey Rainwater-Lovett, Kaitlin Kinsey, Matt Tallaksen, Kate Wilson, Shelby Shin, Lauren Lemaitre, Joseph C. Kaminsky, Joshua Hulse, Juan Dent Lee, Elizabeth C. McKee, Clif Hill, Alison Karlen, Dean Chinazzi, Matteo Davis, Jessica T. Mu, Kunpeng Xiong, Xinyue Piontti, Ana Pastore y Vespignani, Alessandro Rosenstrom, Erik T. Ivy, Julie S. Mayorga, Maria E. Swann, Julie L. España, Guido Cavany, Sean Moore, Sean Perkins, Alex Hladish, Thomas Pillai, Alexander Toh, Kok Ben Longini, Ira Chen, Shi Paul, Rajib Janies, Daniel Thill, Jean-Claude Bouchnita, Anass Bi, Kaiming Lachmann, Michael Fox, Spencer Meyers, Lauren Ancel Srivastava, Ajitesh Porebski, Przemyslaw Venkatramanan, Srini Adiga, Aniruddha Lewis, Bryan Klahn, Brian Outten, Joseph Hurt, Benjamin Chen, Jiangzhuo Mortveit, Henning Wilson, Amanda Marathe, Madhav Hoops, Stefan Bhattacharya, Parantapa Machi, Dustin Cadwell, Betsy L. Healy, Jessica M. Slayton, Rachel B. Johansson, Michael A. Biggerstaff, Matthew Truelove, Shaun Runge, Michael C. Shea, Katriona Viboud, Cécile Lessler, Justin Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub |
title | Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub |
title_full | Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub |
title_fullStr | Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub |
title_full_unstemmed | Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub |
title_short | Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub |
title_sort | informing pandemic response in the face of uncertainty. an evaluation of the u.s. covid-19 scenario modeling hub |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10350156/ https://www.ncbi.nlm.nih.gov/pubmed/37461674 http://dx.doi.org/10.1101/2023.06.28.23291998 |
work_keys_str_mv | AT howertonemily informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT contaminlucie informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT mullanylukec informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT qinmichelle informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT reichnicholasg informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT bentssamantha informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT borcheringrebeccak informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT jungsungmok informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT loosaral informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT smithclairep informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT levanderjohn informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT kerrjessica informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT espinoj informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT vanpanhuiswillemg informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT hochheiserharry informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT galantimarta informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT yamanateresa informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT peisen informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT shamanjeffrey informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT rainwaterlovettkaitlin informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT kinseymatt informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT tallaksenkate informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT wilsonshelby informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT shinlauren informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT lemaitrejosephc informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT kaminskyjoshua informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT hulsejuandent informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT leeelizabethc informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT mckeeclif informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT hillalison informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT karlendean informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT chinazzimatteo informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT davisjessicat informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT mukunpeng informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT xiongxinyue informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT pionttianapastorey informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT vespignanialessandro informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT rosenstromerikt informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT ivyjulies informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT mayorgamariae informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT swannjuliel informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT espanaguido informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT cavanysean informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT mooresean informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT perkinsalex informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT hladishthomas informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT pillaialexander informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT tohkokben informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT longiniira informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT chenshi informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT paulrajib informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT janiesdaniel informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT thilljeanclaude informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT bouchnitaanass informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT bikaiming informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT lachmannmichael informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT foxspencer informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT meyerslaurenancel informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT srivastavaajitesh informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT porebskiprzemyslaw informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT venkatramanansrini informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT adigaaniruddha informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT lewisbryan informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT klahnbrian informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT outtenjoseph informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT hurtbenjamin informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT chenjiangzhuo informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT mortveithenning informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT wilsonamanda informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT marathemadhav informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT hoopsstefan informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT bhattacharyaparantapa informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT machidustin informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT cadwellbetsyl informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT healyjessicam informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT slaytonrachelb informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT johanssonmichaela informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT biggerstaffmatthew informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT trueloveshaun informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT rungemichaelc informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT sheakatriona informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT viboudcecile informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub AT lesslerjustin informingpandemicresponseinthefaceofuncertaintyanevaluationoftheuscovid19scenariomodelinghub |