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Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub

Our ability to forecast epidemics more than a few weeks into the future is constrained by the complexity of disease systems, our limited ability to measure the current state of an epidemic, and uncertainties in how human action will affect transmission. Realistic longer-term projections (spanning mo...

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Autores principales: Howerton, Emily, Contamin, Lucie, Mullany, Luke C, Qin, Michelle, Reich, Nicholas G., Bents, Samantha, Borchering, Rebecca K., Jung, Sung-mok, Loo, Sara L., Smith, Claire P., Levander, John, Kerr, Jessica, Espino, J., van Panhuis, Willem G., Hochheiser, Harry, Galanti, Marta, Yamana, Teresa, Pei, Sen, Shaman, Jeffrey, Rainwater-Lovett, Kaitlin, Kinsey, Matt, Tallaksen, Kate, Wilson, Shelby, Shin, Lauren, Lemaitre, Joseph C., Kaminsky, Joshua, Hulse, Juan Dent, Lee, Elizabeth C., McKee, Clif, Hill, Alison, Karlen, Dean, Chinazzi, Matteo, Davis, Jessica T., Mu, Kunpeng, Xiong, Xinyue, Piontti, Ana Pastore y, Vespignani, Alessandro, Rosenstrom, Erik T., Ivy, Julie S., Mayorga, Maria E., Swann, Julie L., España, Guido, Cavany, Sean, Moore, Sean, Perkins, Alex, Hladish, Thomas, Pillai, Alexander, Toh, Kok Ben, Longini, Ira, Chen, Shi, Paul, Rajib, Janies, Daniel, Thill, Jean-Claude, Bouchnita, Anass, Bi, Kaiming, Lachmann, Michael, Fox, Spencer, Meyers, Lauren Ancel, Srivastava, Ajitesh, Porebski, Przemyslaw, Venkatramanan, Srini, Adiga, Aniruddha, Lewis, Bryan, Klahn, Brian, Outten, Joseph, Hurt, Benjamin, Chen, Jiangzhuo, Mortveit, Henning, Wilson, Amanda, Marathe, Madhav, Hoops, Stefan, Bhattacharya, Parantapa, Machi, Dustin, Cadwell, Betsy L., Healy, Jessica M., Slayton, Rachel B., Johansson, Michael A., Biggerstaff, Matthew, Truelove, Shaun, Runge, Michael C., Shea, Katriona, Viboud, Cécile, Lessler, Justin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10350156/
https://www.ncbi.nlm.nih.gov/pubmed/37461674
http://dx.doi.org/10.1101/2023.06.28.23291998
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author Howerton, Emily
Contamin, Lucie
Mullany, Luke C
Qin, Michelle
Reich, Nicholas G.
Bents, Samantha
Borchering, Rebecca K.
Jung, Sung-mok
Loo, Sara L.
Smith, Claire P.
Levander, John
Kerr, Jessica
Espino, J.
van Panhuis, Willem G.
Hochheiser, Harry
Galanti, Marta
Yamana, Teresa
Pei, Sen
Shaman, Jeffrey
Rainwater-Lovett, Kaitlin
Kinsey, Matt
Tallaksen, Kate
Wilson, Shelby
Shin, Lauren
Lemaitre, Joseph C.
Kaminsky, Joshua
Hulse, Juan Dent
Lee, Elizabeth C.
McKee, Clif
Hill, Alison
Karlen, Dean
Chinazzi, Matteo
Davis, Jessica T.
Mu, Kunpeng
Xiong, Xinyue
Piontti, Ana Pastore y
Vespignani, Alessandro
Rosenstrom, Erik T.
Ivy, Julie S.
Mayorga, Maria E.
Swann, Julie L.
España, Guido
Cavany, Sean
Moore, Sean
Perkins, Alex
Hladish, Thomas
Pillai, Alexander
Toh, Kok Ben
Longini, Ira
Chen, Shi
Paul, Rajib
Janies, Daniel
Thill, Jean-Claude
Bouchnita, Anass
Bi, Kaiming
Lachmann, Michael
Fox, Spencer
Meyers, Lauren Ancel
Srivastava, Ajitesh
Porebski, Przemyslaw
Venkatramanan, Srini
Adiga, Aniruddha
Lewis, Bryan
Klahn, Brian
Outten, Joseph
Hurt, Benjamin
Chen, Jiangzhuo
Mortveit, Henning
Wilson, Amanda
Marathe, Madhav
Hoops, Stefan
Bhattacharya, Parantapa
Machi, Dustin
Cadwell, Betsy L.
Healy, Jessica M.
Slayton, Rachel B.
Johansson, Michael A.
Biggerstaff, Matthew
Truelove, Shaun
Runge, Michael C.
Shea, Katriona
Viboud, Cécile
Lessler, Justin
author_facet Howerton, Emily
Contamin, Lucie
Mullany, Luke C
Qin, Michelle
Reich, Nicholas G.
Bents, Samantha
Borchering, Rebecca K.
Jung, Sung-mok
Loo, Sara L.
Smith, Claire P.
Levander, John
Kerr, Jessica
Espino, J.
van Panhuis, Willem G.
Hochheiser, Harry
Galanti, Marta
Yamana, Teresa
Pei, Sen
Shaman, Jeffrey
Rainwater-Lovett, Kaitlin
Kinsey, Matt
Tallaksen, Kate
Wilson, Shelby
Shin, Lauren
Lemaitre, Joseph C.
Kaminsky, Joshua
Hulse, Juan Dent
Lee, Elizabeth C.
McKee, Clif
Hill, Alison
Karlen, Dean
Chinazzi, Matteo
Davis, Jessica T.
Mu, Kunpeng
Xiong, Xinyue
Piontti, Ana Pastore y
Vespignani, Alessandro
Rosenstrom, Erik T.
Ivy, Julie S.
Mayorga, Maria E.
Swann, Julie L.
España, Guido
Cavany, Sean
Moore, Sean
Perkins, Alex
Hladish, Thomas
Pillai, Alexander
Toh, Kok Ben
Longini, Ira
Chen, Shi
Paul, Rajib
Janies, Daniel
Thill, Jean-Claude
Bouchnita, Anass
Bi, Kaiming
Lachmann, Michael
Fox, Spencer
Meyers, Lauren Ancel
Srivastava, Ajitesh
Porebski, Przemyslaw
Venkatramanan, Srini
Adiga, Aniruddha
Lewis, Bryan
Klahn, Brian
Outten, Joseph
Hurt, Benjamin
Chen, Jiangzhuo
Mortveit, Henning
Wilson, Amanda
Marathe, Madhav
Hoops, Stefan
Bhattacharya, Parantapa
Machi, Dustin
Cadwell, Betsy L.
Healy, Jessica M.
Slayton, Rachel B.
Johansson, Michael A.
Biggerstaff, Matthew
Truelove, Shaun
Runge, Michael C.
Shea, Katriona
Viboud, Cécile
Lessler, Justin
author_sort Howerton, Emily
collection PubMed
description Our ability to forecast epidemics more than a few weeks into the future is constrained by the complexity of disease systems, our limited ability to measure the current state of an epidemic, and uncertainties in how human action will affect transmission. Realistic longer-term projections (spanning more than a few weeks) may, however, be possible under defined scenarios that specify the future state of critical epidemic drivers, with the additional benefit that such scenarios can be used to anticipate the comparative effect of control measures. Since December 2020, the U.S. COVID-19 Scenario Modeling Hub (SMH) has convened multiple modeling teams to make 6-month ahead projections of the number of SARS-CoV-2 cases, hospitalizations and deaths. The SMH released nearly 1.8 million national and state-level projections between February 2021 and November 2022. SMH performance varied widely as a function of both scenario validity and model calibration. Scenario assumptions were periodically invalidated by the arrival of unanticipated SARS-CoV-2 variants, but SMH still provided projections on average 22 weeks before changes in assumptions (such as virus transmissibility) invalidated scenarios and their corresponding projections. During these periods, before emergence of a novel variant, a linear opinion pool ensemble of contributed models was consistently more reliable than any single model, and projection interval coverage was near target levels for the most plausible scenarios (e.g., 79% coverage for 95% projection interval). SMH projections were used operationally to guide planning and policy at different stages of the pandemic, illustrating the value of the hub approach for long-term scenario projections.
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spelling pubmed-103501562023-07-17 Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub Howerton, Emily Contamin, Lucie Mullany, Luke C Qin, Michelle Reich, Nicholas G. Bents, Samantha Borchering, Rebecca K. Jung, Sung-mok Loo, Sara L. Smith, Claire P. Levander, John Kerr, Jessica Espino, J. van Panhuis, Willem G. Hochheiser, Harry Galanti, Marta Yamana, Teresa Pei, Sen Shaman, Jeffrey Rainwater-Lovett, Kaitlin Kinsey, Matt Tallaksen, Kate Wilson, Shelby Shin, Lauren Lemaitre, Joseph C. Kaminsky, Joshua Hulse, Juan Dent Lee, Elizabeth C. McKee, Clif Hill, Alison Karlen, Dean Chinazzi, Matteo Davis, Jessica T. Mu, Kunpeng Xiong, Xinyue Piontti, Ana Pastore y Vespignani, Alessandro Rosenstrom, Erik T. Ivy, Julie S. Mayorga, Maria E. Swann, Julie L. España, Guido Cavany, Sean Moore, Sean Perkins, Alex Hladish, Thomas Pillai, Alexander Toh, Kok Ben Longini, Ira Chen, Shi Paul, Rajib Janies, Daniel Thill, Jean-Claude Bouchnita, Anass Bi, Kaiming Lachmann, Michael Fox, Spencer Meyers, Lauren Ancel Srivastava, Ajitesh Porebski, Przemyslaw Venkatramanan, Srini Adiga, Aniruddha Lewis, Bryan Klahn, Brian Outten, Joseph Hurt, Benjamin Chen, Jiangzhuo Mortveit, Henning Wilson, Amanda Marathe, Madhav Hoops, Stefan Bhattacharya, Parantapa Machi, Dustin Cadwell, Betsy L. Healy, Jessica M. Slayton, Rachel B. Johansson, Michael A. Biggerstaff, Matthew Truelove, Shaun Runge, Michael C. Shea, Katriona Viboud, Cécile Lessler, Justin medRxiv Article Our ability to forecast epidemics more than a few weeks into the future is constrained by the complexity of disease systems, our limited ability to measure the current state of an epidemic, and uncertainties in how human action will affect transmission. Realistic longer-term projections (spanning more than a few weeks) may, however, be possible under defined scenarios that specify the future state of critical epidemic drivers, with the additional benefit that such scenarios can be used to anticipate the comparative effect of control measures. Since December 2020, the U.S. COVID-19 Scenario Modeling Hub (SMH) has convened multiple modeling teams to make 6-month ahead projections of the number of SARS-CoV-2 cases, hospitalizations and deaths. The SMH released nearly 1.8 million national and state-level projections between February 2021 and November 2022. SMH performance varied widely as a function of both scenario validity and model calibration. Scenario assumptions were periodically invalidated by the arrival of unanticipated SARS-CoV-2 variants, but SMH still provided projections on average 22 weeks before changes in assumptions (such as virus transmissibility) invalidated scenarios and their corresponding projections. During these periods, before emergence of a novel variant, a linear opinion pool ensemble of contributed models was consistently more reliable than any single model, and projection interval coverage was near target levels for the most plausible scenarios (e.g., 79% coverage for 95% projection interval). SMH projections were used operationally to guide planning and policy at different stages of the pandemic, illustrating the value of the hub approach for long-term scenario projections. Cold Spring Harbor Laboratory 2023-07-03 /pmc/articles/PMC10350156/ /pubmed/37461674 http://dx.doi.org/10.1101/2023.06.28.23291998 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use.
spellingShingle Article
Howerton, Emily
Contamin, Lucie
Mullany, Luke C
Qin, Michelle
Reich, Nicholas G.
Bents, Samantha
Borchering, Rebecca K.
Jung, Sung-mok
Loo, Sara L.
Smith, Claire P.
Levander, John
Kerr, Jessica
Espino, J.
van Panhuis, Willem G.
Hochheiser, Harry
Galanti, Marta
Yamana, Teresa
Pei, Sen
Shaman, Jeffrey
Rainwater-Lovett, Kaitlin
Kinsey, Matt
Tallaksen, Kate
Wilson, Shelby
Shin, Lauren
Lemaitre, Joseph C.
Kaminsky, Joshua
Hulse, Juan Dent
Lee, Elizabeth C.
McKee, Clif
Hill, Alison
Karlen, Dean
Chinazzi, Matteo
Davis, Jessica T.
Mu, Kunpeng
Xiong, Xinyue
Piontti, Ana Pastore y
Vespignani, Alessandro
Rosenstrom, Erik T.
Ivy, Julie S.
Mayorga, Maria E.
Swann, Julie L.
España, Guido
Cavany, Sean
Moore, Sean
Perkins, Alex
Hladish, Thomas
Pillai, Alexander
Toh, Kok Ben
Longini, Ira
Chen, Shi
Paul, Rajib
Janies, Daniel
Thill, Jean-Claude
Bouchnita, Anass
Bi, Kaiming
Lachmann, Michael
Fox, Spencer
Meyers, Lauren Ancel
Srivastava, Ajitesh
Porebski, Przemyslaw
Venkatramanan, Srini
Adiga, Aniruddha
Lewis, Bryan
Klahn, Brian
Outten, Joseph
Hurt, Benjamin
Chen, Jiangzhuo
Mortveit, Henning
Wilson, Amanda
Marathe, Madhav
Hoops, Stefan
Bhattacharya, Parantapa
Machi, Dustin
Cadwell, Betsy L.
Healy, Jessica M.
Slayton, Rachel B.
Johansson, Michael A.
Biggerstaff, Matthew
Truelove, Shaun
Runge, Michael C.
Shea, Katriona
Viboud, Cécile
Lessler, Justin
Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub
title Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub
title_full Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub
title_fullStr Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub
title_full_unstemmed Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub
title_short Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub
title_sort informing pandemic response in the face of uncertainty. an evaluation of the u.s. covid-19 scenario modeling hub
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10350156/
https://www.ncbi.nlm.nih.gov/pubmed/37461674
http://dx.doi.org/10.1101/2023.06.28.23291998
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