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Exploration and Validation of Potential Biomarkers and Therapeutic Targets in Ferroptosis of Asthma
PURPOSE: Asthma is a chronic inflammatory airway disease involving multiple mechanisms, of which ferroptosis is a form of programmed cell death. Recent studies have shown that ferroptosis may play a crucial role in the pathogenesis of asthma, but no specific ferroptosis gene has been found in asthma...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Dove
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10350417/ https://www.ncbi.nlm.nih.gov/pubmed/37465372 http://dx.doi.org/10.2147/JAA.S416276 |
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author | Xing, Yanqing Feng, Liting Dong, Yangdou Li, Yupeng Zhang, Lulu Wu, Qiannan Huo, Rujie Dong, Yanting Tian, Xinrui Tian, Xinli |
author_facet | Xing, Yanqing Feng, Liting Dong, Yangdou Li, Yupeng Zhang, Lulu Wu, Qiannan Huo, Rujie Dong, Yanting Tian, Xinrui Tian, Xinli |
author_sort | Xing, Yanqing |
collection | PubMed |
description | PURPOSE: Asthma is a chronic inflammatory airway disease involving multiple mechanisms, of which ferroptosis is a form of programmed cell death. Recent studies have shown that ferroptosis may play a crucial role in the pathogenesis of asthma, but no specific ferroptosis gene has been found in asthma, and the exact mechanism is still unclear. The present study aimed to screen ferroptosis genes associated with asthma and find therapeutic targets, in order to contribute a new clue for the diagnosis and therapy of asthma. METHODS: Ferroptosis-related differentially expressed genes (FR-DEGs) in asthma were selected by the GSE41861, GSE43696 and ferroptosis datasets. Next, the FR-DEGs were subjected by GO and KEGG enrichment, and the mRNA-miRNA network was constructed. Then, GSEA and GSVA enrichment analysis and Immune infiltration analysis were performed, followed by targeted drug prediction. Finally, the expression of FR-DEGs was confirmed using GSE63142 dataset and RT-PCR assay. RESULTS: We found 13 FR-DEGs by the GSE41861, GSE43696 and ferroptosis database. Functional enrichment analysis revealed that the 13 FR-DEGs were enriched in oxidative stress, immune response, ferroptosis, lysosome, necrosis, apoptosis etc. Moreover, our results revealed the mRNA-miRNA network of the FR-DEGs and identified candidate drugs. Also, immune infiltration revealed that ELAVL1, CREB5, CBR1 and NR1D2 are associated with the immune cells and may be potential targets in asthma. Finally, 10 FR-DEGs were validated by the GSE63142 database. It was verified that 7 FR-DEGs were differentially expressed by collecting asthma patients and healthy controls. CONCLUSION: This study ultimately identified 7 FR-DEGs for the diagnosis and therapy of asthma. These 7 FR-DEGs contribute to oxidative stress and immune responses. This study provides potential therapeutic targets and biomarkers for asthma patients, shedding further light on the pathogenesis of asthma as well as providing new insights into the treatment of asthma. |
format | Online Article Text |
id | pubmed-10350417 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Dove |
record_format | MEDLINE/PubMed |
spelling | pubmed-103504172023-07-18 Exploration and Validation of Potential Biomarkers and Therapeutic Targets in Ferroptosis of Asthma Xing, Yanqing Feng, Liting Dong, Yangdou Li, Yupeng Zhang, Lulu Wu, Qiannan Huo, Rujie Dong, Yanting Tian, Xinrui Tian, Xinli J Asthma Allergy Original Research PURPOSE: Asthma is a chronic inflammatory airway disease involving multiple mechanisms, of which ferroptosis is a form of programmed cell death. Recent studies have shown that ferroptosis may play a crucial role in the pathogenesis of asthma, but no specific ferroptosis gene has been found in asthma, and the exact mechanism is still unclear. The present study aimed to screen ferroptosis genes associated with asthma and find therapeutic targets, in order to contribute a new clue for the diagnosis and therapy of asthma. METHODS: Ferroptosis-related differentially expressed genes (FR-DEGs) in asthma were selected by the GSE41861, GSE43696 and ferroptosis datasets. Next, the FR-DEGs were subjected by GO and KEGG enrichment, and the mRNA-miRNA network was constructed. Then, GSEA and GSVA enrichment analysis and Immune infiltration analysis were performed, followed by targeted drug prediction. Finally, the expression of FR-DEGs was confirmed using GSE63142 dataset and RT-PCR assay. RESULTS: We found 13 FR-DEGs by the GSE41861, GSE43696 and ferroptosis database. Functional enrichment analysis revealed that the 13 FR-DEGs were enriched in oxidative stress, immune response, ferroptosis, lysosome, necrosis, apoptosis etc. Moreover, our results revealed the mRNA-miRNA network of the FR-DEGs and identified candidate drugs. Also, immune infiltration revealed that ELAVL1, CREB5, CBR1 and NR1D2 are associated with the immune cells and may be potential targets in asthma. Finally, 10 FR-DEGs were validated by the GSE63142 database. It was verified that 7 FR-DEGs were differentially expressed by collecting asthma patients and healthy controls. CONCLUSION: This study ultimately identified 7 FR-DEGs for the diagnosis and therapy of asthma. These 7 FR-DEGs contribute to oxidative stress and immune responses. This study provides potential therapeutic targets and biomarkers for asthma patients, shedding further light on the pathogenesis of asthma as well as providing new insights into the treatment of asthma. Dove 2023-07-12 /pmc/articles/PMC10350417/ /pubmed/37465372 http://dx.doi.org/10.2147/JAA.S416276 Text en © 2023 Xing et al. https://creativecommons.org/licenses/by-nc/3.0/This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/ (https://creativecommons.org/licenses/by-nc/3.0/) ). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php). |
spellingShingle | Original Research Xing, Yanqing Feng, Liting Dong, Yangdou Li, Yupeng Zhang, Lulu Wu, Qiannan Huo, Rujie Dong, Yanting Tian, Xinrui Tian, Xinli Exploration and Validation of Potential Biomarkers and Therapeutic Targets in Ferroptosis of Asthma |
title | Exploration and Validation of Potential Biomarkers and Therapeutic Targets in Ferroptosis of Asthma |
title_full | Exploration and Validation of Potential Biomarkers and Therapeutic Targets in Ferroptosis of Asthma |
title_fullStr | Exploration and Validation of Potential Biomarkers and Therapeutic Targets in Ferroptosis of Asthma |
title_full_unstemmed | Exploration and Validation of Potential Biomarkers and Therapeutic Targets in Ferroptosis of Asthma |
title_short | Exploration and Validation of Potential Biomarkers and Therapeutic Targets in Ferroptosis of Asthma |
title_sort | exploration and validation of potential biomarkers and therapeutic targets in ferroptosis of asthma |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10350417/ https://www.ncbi.nlm.nih.gov/pubmed/37465372 http://dx.doi.org/10.2147/JAA.S416276 |
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