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Explainable ML models for a deeper insight on treatment decision for localized prostate cancer
Although there are several decision aids for the treatment of localized prostate cancer (PCa), there are limitations in the consistency and certainty of the information provided. We aimed to better understand the treatment decision process and develop a decision-predicting model considering oncologi...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10352331/ https://www.ncbi.nlm.nih.gov/pubmed/37460568 http://dx.doi.org/10.1038/s41598-023-38162-1 |
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author | Han, Jang Hee Lee, Sungyup Lee, Byounghwa Baek, Ock-kee Washington, Samuel L. Herlemann, Annika Lonergan, Peter E. Carroll, Peter R. Jeong, Chang Wook Cooperberg, Matthew R. |
author_facet | Han, Jang Hee Lee, Sungyup Lee, Byounghwa Baek, Ock-kee Washington, Samuel L. Herlemann, Annika Lonergan, Peter E. Carroll, Peter R. Jeong, Chang Wook Cooperberg, Matthew R. |
author_sort | Han, Jang Hee |
collection | PubMed |
description | Although there are several decision aids for the treatment of localized prostate cancer (PCa), there are limitations in the consistency and certainty of the information provided. We aimed to better understand the treatment decision process and develop a decision-predicting model considering oncologic, demographic, socioeconomic, and geographic factors. Men newly diagnosed with localized PCa between 2010 and 2015 from the Surveillance, Epidemiology, and End Results Prostate with Watchful Waiting database were included (n = 255,837). We designed two prediction models: (1) Active surveillance/watchful waiting (AS/WW), radical prostatectomy (RP), and radiation therapy (RT) decision prediction in the entire cohort. (2) Prediction of AS/WW decisions in the low-risk cohort. The discrimination of the model was evaluated using the multiclass area under the curve (AUC). A plausible Shapley additive explanations value was used to explain the model’s prediction results. Oncological variables affected the RP decisions most, whereas RT was highly affected by geographic factors. The dependence plot depicted the feature interactions in reaching a treatment decision. The decision predicting model achieved an overall multiclass AUC of 0.77, whereas 0.74 was confirmed for the low-risk model. Using a large population-based real-world database, we unraveled the complex decision-making process and visualized nonlinear feature interactions in localized PCa. |
format | Online Article Text |
id | pubmed-10352331 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-103523312023-07-19 Explainable ML models for a deeper insight on treatment decision for localized prostate cancer Han, Jang Hee Lee, Sungyup Lee, Byounghwa Baek, Ock-kee Washington, Samuel L. Herlemann, Annika Lonergan, Peter E. Carroll, Peter R. Jeong, Chang Wook Cooperberg, Matthew R. Sci Rep Article Although there are several decision aids for the treatment of localized prostate cancer (PCa), there are limitations in the consistency and certainty of the information provided. We aimed to better understand the treatment decision process and develop a decision-predicting model considering oncologic, demographic, socioeconomic, and geographic factors. Men newly diagnosed with localized PCa between 2010 and 2015 from the Surveillance, Epidemiology, and End Results Prostate with Watchful Waiting database were included (n = 255,837). We designed two prediction models: (1) Active surveillance/watchful waiting (AS/WW), radical prostatectomy (RP), and radiation therapy (RT) decision prediction in the entire cohort. (2) Prediction of AS/WW decisions in the low-risk cohort. The discrimination of the model was evaluated using the multiclass area under the curve (AUC). A plausible Shapley additive explanations value was used to explain the model’s prediction results. Oncological variables affected the RP decisions most, whereas RT was highly affected by geographic factors. The dependence plot depicted the feature interactions in reaching a treatment decision. The decision predicting model achieved an overall multiclass AUC of 0.77, whereas 0.74 was confirmed for the low-risk model. Using a large population-based real-world database, we unraveled the complex decision-making process and visualized nonlinear feature interactions in localized PCa. Nature Publishing Group UK 2023-07-17 /pmc/articles/PMC10352331/ /pubmed/37460568 http://dx.doi.org/10.1038/s41598-023-38162-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Han, Jang Hee Lee, Sungyup Lee, Byounghwa Baek, Ock-kee Washington, Samuel L. Herlemann, Annika Lonergan, Peter E. Carroll, Peter R. Jeong, Chang Wook Cooperberg, Matthew R. Explainable ML models for a deeper insight on treatment decision for localized prostate cancer |
title | Explainable ML models for a deeper insight on treatment decision for localized prostate cancer |
title_full | Explainable ML models for a deeper insight on treatment decision for localized prostate cancer |
title_fullStr | Explainable ML models for a deeper insight on treatment decision for localized prostate cancer |
title_full_unstemmed | Explainable ML models for a deeper insight on treatment decision for localized prostate cancer |
title_short | Explainable ML models for a deeper insight on treatment decision for localized prostate cancer |
title_sort | explainable ml models for a deeper insight on treatment decision for localized prostate cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10352331/ https://www.ncbi.nlm.nih.gov/pubmed/37460568 http://dx.doi.org/10.1038/s41598-023-38162-1 |
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