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Whole‐genome methylation analysis of aging human tissues identifies age‐related changes in developmental and neurological pathways

Age‐associated changes in the DNA methylation state can be used to assess the pace of aging. However, it is not understood what mechanisms drive these changes and whether these changes affect the development of aging phenotypes and the aging process in general. This study was aimed at gaining a more...

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Autores principales: Tharakan, Ravi, Ubaida‐Mohien, Ceereena, Dunn, Christopher, Kaileh, Mary, Tryggvadottir, Rakel, Zukley, Linda, Chia, Chee W., Sen, Ranjan, Ferrucci, Luigi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10352543/
https://www.ncbi.nlm.nih.gov/pubmed/37309088
http://dx.doi.org/10.1111/acel.13847
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author Tharakan, Ravi
Ubaida‐Mohien, Ceereena
Dunn, Christopher
Kaileh, Mary
Tryggvadottir, Rakel
Zukley, Linda
Chia, Chee W.
Sen, Ranjan
Ferrucci, Luigi
author_facet Tharakan, Ravi
Ubaida‐Mohien, Ceereena
Dunn, Christopher
Kaileh, Mary
Tryggvadottir, Rakel
Zukley, Linda
Chia, Chee W.
Sen, Ranjan
Ferrucci, Luigi
author_sort Tharakan, Ravi
collection PubMed
description Age‐associated changes in the DNA methylation state can be used to assess the pace of aging. However, it is not understood what mechanisms drive these changes and whether these changes affect the development of aging phenotypes and the aging process in general. This study was aimed at gaining a more comprehensive understanding of aging‐related methylation changes across the whole genome, and relating these changes to biological functions. It has been shown that skeletal muscle and blood monocytes undergo typical changes with aging. Using whole‐genome bisulfite sequencing, we sought to characterize the genome‐wide changes in methylation of DNA derived from both skeletal muscle and blood monocytes, and link these changes to specific genes and pathways through enrichment analysis. We found that methylation changes occur with aging at the locations enriched for developmental and neuronal pathways regulated in these two peripheral tissues. These results contribute to our understanding of changes in epigenome in human aging.
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spelling pubmed-103525432023-07-19 Whole‐genome methylation analysis of aging human tissues identifies age‐related changes in developmental and neurological pathways Tharakan, Ravi Ubaida‐Mohien, Ceereena Dunn, Christopher Kaileh, Mary Tryggvadottir, Rakel Zukley, Linda Chia, Chee W. Sen, Ranjan Ferrucci, Luigi Aging Cell Research Articles Age‐associated changes in the DNA methylation state can be used to assess the pace of aging. However, it is not understood what mechanisms drive these changes and whether these changes affect the development of aging phenotypes and the aging process in general. This study was aimed at gaining a more comprehensive understanding of aging‐related methylation changes across the whole genome, and relating these changes to biological functions. It has been shown that skeletal muscle and blood monocytes undergo typical changes with aging. Using whole‐genome bisulfite sequencing, we sought to characterize the genome‐wide changes in methylation of DNA derived from both skeletal muscle and blood monocytes, and link these changes to specific genes and pathways through enrichment analysis. We found that methylation changes occur with aging at the locations enriched for developmental and neuronal pathways regulated in these two peripheral tissues. These results contribute to our understanding of changes in epigenome in human aging. John Wiley and Sons Inc. 2023-06-12 /pmc/articles/PMC10352543/ /pubmed/37309088 http://dx.doi.org/10.1111/acel.13847 Text en Published 2023. This article is a U.S. Government work and is in the public domain in the USA. Aging Cell published by Anatomical Society and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Tharakan, Ravi
Ubaida‐Mohien, Ceereena
Dunn, Christopher
Kaileh, Mary
Tryggvadottir, Rakel
Zukley, Linda
Chia, Chee W.
Sen, Ranjan
Ferrucci, Luigi
Whole‐genome methylation analysis of aging human tissues identifies age‐related changes in developmental and neurological pathways
title Whole‐genome methylation analysis of aging human tissues identifies age‐related changes in developmental and neurological pathways
title_full Whole‐genome methylation analysis of aging human tissues identifies age‐related changes in developmental and neurological pathways
title_fullStr Whole‐genome methylation analysis of aging human tissues identifies age‐related changes in developmental and neurological pathways
title_full_unstemmed Whole‐genome methylation analysis of aging human tissues identifies age‐related changes in developmental and neurological pathways
title_short Whole‐genome methylation analysis of aging human tissues identifies age‐related changes in developmental and neurological pathways
title_sort whole‐genome methylation analysis of aging human tissues identifies age‐related changes in developmental and neurological pathways
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10352543/
https://www.ncbi.nlm.nih.gov/pubmed/37309088
http://dx.doi.org/10.1111/acel.13847
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