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Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position
The spider of Ectatosticta davidi, belonging to the lamp-shade web spider family, Hypochilidae, which is closely related to Hypochilidae and Filistatidae and recovered as sister of the rest Araneomorphs spiders. Here we show the final assembled genome of E. davidi with 2.16 Gb in 15 chromosomes. The...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10354039/ https://www.ncbi.nlm.nih.gov/pubmed/37463957 http://dx.doi.org/10.1038/s42003-023-05129-x |
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author | Fan, Zheng Wang, Lu-Yu Xiao, Lin Tan, Bing Luo, Bin Ren, Tian-Yu Liu, Ning Zhang, Zhi-Sheng Bai, Ming |
author_facet | Fan, Zheng Wang, Lu-Yu Xiao, Lin Tan, Bing Luo, Bin Ren, Tian-Yu Liu, Ning Zhang, Zhi-Sheng Bai, Ming |
author_sort | Fan, Zheng |
collection | PubMed |
description | The spider of Ectatosticta davidi, belonging to the lamp-shade web spider family, Hypochilidae, which is closely related to Hypochilidae and Filistatidae and recovered as sister of the rest Araneomorphs spiders. Here we show the final assembled genome of E. davidi with 2.16 Gb in 15 chromosomes. Then we confirm the evolutionary position of Hypochilidae. Moreover, we find that the GMC gene family exhibit high conservation throughout the evolution of true spiders. We also find that the MaSp genes of E. davidi may represent an early stage of MaSp and MiSp genes in other true spiders, while CrSp shares a common origin with AgSp and PySp but differ from MaSp. Altogether, this study contributes to addressing the limited availability of genomic sequences from Hypochilidae spiders, and provides a valuable resource for investigating the genomic evolution of spiders. |
format | Online Article Text |
id | pubmed-10354039 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-103540392023-07-20 Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position Fan, Zheng Wang, Lu-Yu Xiao, Lin Tan, Bing Luo, Bin Ren, Tian-Yu Liu, Ning Zhang, Zhi-Sheng Bai, Ming Commun Biol Article The spider of Ectatosticta davidi, belonging to the lamp-shade web spider family, Hypochilidae, which is closely related to Hypochilidae and Filistatidae and recovered as sister of the rest Araneomorphs spiders. Here we show the final assembled genome of E. davidi with 2.16 Gb in 15 chromosomes. Then we confirm the evolutionary position of Hypochilidae. Moreover, we find that the GMC gene family exhibit high conservation throughout the evolution of true spiders. We also find that the MaSp genes of E. davidi may represent an early stage of MaSp and MiSp genes in other true spiders, while CrSp shares a common origin with AgSp and PySp but differ from MaSp. Altogether, this study contributes to addressing the limited availability of genomic sequences from Hypochilidae spiders, and provides a valuable resource for investigating the genomic evolution of spiders. Nature Publishing Group UK 2023-07-18 /pmc/articles/PMC10354039/ /pubmed/37463957 http://dx.doi.org/10.1038/s42003-023-05129-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Fan, Zheng Wang, Lu-Yu Xiao, Lin Tan, Bing Luo, Bin Ren, Tian-Yu Liu, Ning Zhang, Zhi-Sheng Bai, Ming Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position |
title | Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position |
title_full | Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position |
title_fullStr | Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position |
title_full_unstemmed | Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position |
title_short | Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position |
title_sort | lampshade web spider ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10354039/ https://www.ncbi.nlm.nih.gov/pubmed/37463957 http://dx.doi.org/10.1038/s42003-023-05129-x |
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