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Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position

The spider of Ectatosticta davidi, belonging to the lamp-shade web spider family, Hypochilidae, which is closely related to Hypochilidae and Filistatidae and recovered as sister of the rest Araneomorphs spiders. Here we show the final assembled genome of E. davidi with 2.16 Gb in 15 chromosomes. The...

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Autores principales: Fan, Zheng, Wang, Lu-Yu, Xiao, Lin, Tan, Bing, Luo, Bin, Ren, Tian-Yu, Liu, Ning, Zhang, Zhi-Sheng, Bai, Ming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10354039/
https://www.ncbi.nlm.nih.gov/pubmed/37463957
http://dx.doi.org/10.1038/s42003-023-05129-x
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author Fan, Zheng
Wang, Lu-Yu
Xiao, Lin
Tan, Bing
Luo, Bin
Ren, Tian-Yu
Liu, Ning
Zhang, Zhi-Sheng
Bai, Ming
author_facet Fan, Zheng
Wang, Lu-Yu
Xiao, Lin
Tan, Bing
Luo, Bin
Ren, Tian-Yu
Liu, Ning
Zhang, Zhi-Sheng
Bai, Ming
author_sort Fan, Zheng
collection PubMed
description The spider of Ectatosticta davidi, belonging to the lamp-shade web spider family, Hypochilidae, which is closely related to Hypochilidae and Filistatidae and recovered as sister of the rest Araneomorphs spiders. Here we show the final assembled genome of E. davidi with 2.16 Gb in 15 chromosomes. Then we confirm the evolutionary position of Hypochilidae. Moreover, we find that the GMC gene family exhibit high conservation throughout the evolution of true spiders. We also find that the MaSp genes of E. davidi may represent an early stage of MaSp and MiSp genes in other true spiders, while CrSp shares a common origin with AgSp and PySp but differ from MaSp. Altogether, this study contributes to addressing the limited availability of genomic sequences from Hypochilidae spiders, and provides a valuable resource for investigating the genomic evolution of spiders.
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spelling pubmed-103540392023-07-20 Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position Fan, Zheng Wang, Lu-Yu Xiao, Lin Tan, Bing Luo, Bin Ren, Tian-Yu Liu, Ning Zhang, Zhi-Sheng Bai, Ming Commun Biol Article The spider of Ectatosticta davidi, belonging to the lamp-shade web spider family, Hypochilidae, which is closely related to Hypochilidae and Filistatidae and recovered as sister of the rest Araneomorphs spiders. Here we show the final assembled genome of E. davidi with 2.16 Gb in 15 chromosomes. Then we confirm the evolutionary position of Hypochilidae. Moreover, we find that the GMC gene family exhibit high conservation throughout the evolution of true spiders. We also find that the MaSp genes of E. davidi may represent an early stage of MaSp and MiSp genes in other true spiders, while CrSp shares a common origin with AgSp and PySp but differ from MaSp. Altogether, this study contributes to addressing the limited availability of genomic sequences from Hypochilidae spiders, and provides a valuable resource for investigating the genomic evolution of spiders. Nature Publishing Group UK 2023-07-18 /pmc/articles/PMC10354039/ /pubmed/37463957 http://dx.doi.org/10.1038/s42003-023-05129-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Fan, Zheng
Wang, Lu-Yu
Xiao, Lin
Tan, Bing
Luo, Bin
Ren, Tian-Yu
Liu, Ning
Zhang, Zhi-Sheng
Bai, Ming
Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position
title Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position
title_full Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position
title_fullStr Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position
title_full_unstemmed Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position
title_short Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position
title_sort lampshade web spider ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10354039/
https://www.ncbi.nlm.nih.gov/pubmed/37463957
http://dx.doi.org/10.1038/s42003-023-05129-x
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