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Grading of lung adenocarcinomas with simultaneous segmentation by artificial intelligence (GLASS-AI)

Preclinical genetically engineered mouse models (GEMMs) of lung adenocarcinoma are invaluable for investigating molecular drivers of tumor formation, progression, and therapeutic resistance. However, histological analysis of these GEMMs requires significant time and training to ensure accuracy and c...

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Autores principales: Lockhart, John H., Ackerman, Hayley D., Lee, Kyubum, Abdalah, Mahmoud, Davis, Andrew John, Hackel, Nicole, Boyle, Theresa A., Saller, James, Keske, Aysenur, Hänggi, Kay, Ruffell, Brian, Stringfield, Olya, Cress, W. Douglas, Tan, Aik Choon, Flores, Elsa R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10354042/
https://www.ncbi.nlm.nih.gov/pubmed/37464050
http://dx.doi.org/10.1038/s41698-023-00419-3
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author Lockhart, John H.
Ackerman, Hayley D.
Lee, Kyubum
Abdalah, Mahmoud
Davis, Andrew John
Hackel, Nicole
Boyle, Theresa A.
Saller, James
Keske, Aysenur
Hänggi, Kay
Ruffell, Brian
Stringfield, Olya
Cress, W. Douglas
Tan, Aik Choon
Flores, Elsa R.
author_facet Lockhart, John H.
Ackerman, Hayley D.
Lee, Kyubum
Abdalah, Mahmoud
Davis, Andrew John
Hackel, Nicole
Boyle, Theresa A.
Saller, James
Keske, Aysenur
Hänggi, Kay
Ruffell, Brian
Stringfield, Olya
Cress, W. Douglas
Tan, Aik Choon
Flores, Elsa R.
author_sort Lockhart, John H.
collection PubMed
description Preclinical genetically engineered mouse models (GEMMs) of lung adenocarcinoma are invaluable for investigating molecular drivers of tumor formation, progression, and therapeutic resistance. However, histological analysis of these GEMMs requires significant time and training to ensure accuracy and consistency. To achieve a more objective and standardized analysis, we used machine learning to create GLASS-AI, a histological image analysis tool that the broader cancer research community can utilize to grade, segment, and analyze tumors in preclinical models of lung adenocarcinoma. GLASS-AI demonstrates strong agreement with expert human raters while uncovering a significant degree of unreported intratumor heterogeneity. Integrating immunohistochemical staining with high-resolution grade analysis by GLASS-AI identified dysregulation of Mapk/Erk signaling in high-grade lung adenocarcinomas and locally advanced tumor regions. Our work demonstrates the benefit of employing GLASS-AI in preclinical lung adenocarcinoma models and the power of integrating machine learning and molecular biology techniques for studying the molecular pathways that underlie cancer progression.
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spelling pubmed-103540422023-07-20 Grading of lung adenocarcinomas with simultaneous segmentation by artificial intelligence (GLASS-AI) Lockhart, John H. Ackerman, Hayley D. Lee, Kyubum Abdalah, Mahmoud Davis, Andrew John Hackel, Nicole Boyle, Theresa A. Saller, James Keske, Aysenur Hänggi, Kay Ruffell, Brian Stringfield, Olya Cress, W. Douglas Tan, Aik Choon Flores, Elsa R. NPJ Precis Oncol Article Preclinical genetically engineered mouse models (GEMMs) of lung adenocarcinoma are invaluable for investigating molecular drivers of tumor formation, progression, and therapeutic resistance. However, histological analysis of these GEMMs requires significant time and training to ensure accuracy and consistency. To achieve a more objective and standardized analysis, we used machine learning to create GLASS-AI, a histological image analysis tool that the broader cancer research community can utilize to grade, segment, and analyze tumors in preclinical models of lung adenocarcinoma. GLASS-AI demonstrates strong agreement with expert human raters while uncovering a significant degree of unreported intratumor heterogeneity. Integrating immunohistochemical staining with high-resolution grade analysis by GLASS-AI identified dysregulation of Mapk/Erk signaling in high-grade lung adenocarcinomas and locally advanced tumor regions. Our work demonstrates the benefit of employing GLASS-AI in preclinical lung adenocarcinoma models and the power of integrating machine learning and molecular biology techniques for studying the molecular pathways that underlie cancer progression. Nature Publishing Group UK 2023-07-18 /pmc/articles/PMC10354042/ /pubmed/37464050 http://dx.doi.org/10.1038/s41698-023-00419-3 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Lockhart, John H.
Ackerman, Hayley D.
Lee, Kyubum
Abdalah, Mahmoud
Davis, Andrew John
Hackel, Nicole
Boyle, Theresa A.
Saller, James
Keske, Aysenur
Hänggi, Kay
Ruffell, Brian
Stringfield, Olya
Cress, W. Douglas
Tan, Aik Choon
Flores, Elsa R.
Grading of lung adenocarcinomas with simultaneous segmentation by artificial intelligence (GLASS-AI)
title Grading of lung adenocarcinomas with simultaneous segmentation by artificial intelligence (GLASS-AI)
title_full Grading of lung adenocarcinomas with simultaneous segmentation by artificial intelligence (GLASS-AI)
title_fullStr Grading of lung adenocarcinomas with simultaneous segmentation by artificial intelligence (GLASS-AI)
title_full_unstemmed Grading of lung adenocarcinomas with simultaneous segmentation by artificial intelligence (GLASS-AI)
title_short Grading of lung adenocarcinomas with simultaneous segmentation by artificial intelligence (GLASS-AI)
title_sort grading of lung adenocarcinomas with simultaneous segmentation by artificial intelligence (glass-ai)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10354042/
https://www.ncbi.nlm.nih.gov/pubmed/37464050
http://dx.doi.org/10.1038/s41698-023-00419-3
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